View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_low_21 (Length: 210)

Name: NF10301_low_21
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_low_21
NF10301_low_21
[»] chr3 (1 HSPs)
chr3 (2-210)||(1282671-1282879)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-210)||(998-1204)
[»] chr8 (1 HSPs)
chr8 (1-210)||(1675761-1675967)
[»] chr6 (28 HSPs)
chr6 (4-210)||(4618541-4618747)
chr6 (4-210)||(4603350-4603556)
chr6 (4-210)||(4594250-4594456)
chr6 (1-210)||(4565266-4565475)
chr6 (61-210)||(4488879-4489028)
chr6 (25-210)||(4627411-4627596)
chr6 (25-210)||(4623568-4623753)
chr6 (83-210)||(4502975-4503102)
chr6 (83-210)||(4517659-4517786)
chr6 (1-210)||(4581251-4581460)
chr6 (118-210)||(4612400-4612492)
chr6 (83-210)||(3173322-3173449)
chr6 (116-210)||(4482217-4482311)
chr6 (144-210)||(4507291-4507357)
chr6 (140-210)||(4558501-4558571)
chr6 (83-210)||(4586951-4587078)
chr6 (116-210)||(4575807-4575901)
chr6 (25-210)||(4258858-4259043)
chr6 (116-204)||(4569426-4569514)
chr6 (156-210)||(4255491-4255545)
chr6 (116-210)||(4265739-4265833)
chr6 (140-210)||(4513661-4513731)
chr6 (155-210)||(4572357-4572412)
chr6 (116-210)||(4562014-4562107)
chr6 (90-207)||(4599489-4599606)
chr6 (25-210)||(4298180-4298365)
chr6 (174-209)||(4483534-4483569)
chr6 (144-210)||(4462587-4462653)
[»] chr7 (1 HSPs)
chr7 (25-210)||(3088006-3088191)
[»] scaffold0475 (1 HSPs)
scaffold0475 (116-210)||(2176-2270)
[»] scaffold0288 (1 HSPs)
scaffold0288 (116-210)||(2133-2227)
[»] chr5 (1 HSPs)
chr5 (83-210)||(24104414-24104541)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 1282671 - 1282879
Alignment:
Q  2 gcagagtgattaagcctagtaataagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccgt 101  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  ||||||| ||||||||||||||| |    
T  1282671 gcagagtgattaagtctagtaataagttcacaatagggtttaaggaaattctttcttatagattgacaaagagaaggtacatgttgactaacatcaccat 1282770  T
Q  102 ctccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtg 201  Q
    | |||||||||| |||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  1282771 caccttctagtgatgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatctagggcatttggacctcttgatttgagcaagcgtttgtg 1282870  T
Q  202 attgtattc 210  Q
    |||||||||    
T  1282871 attgtattc 1282879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 998 - 1204
Alignment:
Q  1 ggcagagtgattaagcctagtaataagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccg 100  Q
    ||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||  |||||||||||||  ||||    |||||||||||||||     
T  998 ggcagagtgattaagtctattaatgagttcacaaaagggtttaaggaaattctttcttatagattgacaaagagaaggtag---ttgactaacatcacca 1094  T
Q  101 tctccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgt 200  Q
    || |||||||||| |||||||||||||||||| ||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||| |||||||    
T  1095 tcaccttctagtggtgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatccaaggcagttggacctcttgatttgagcaaacgtttgt 1194  T
Q  201 gattgtattc 210  Q
    ||||||||||    
T  1195 gattgtattc 1204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 1675761 - 1675967
Alignment:
Q  1 ggcagagtgattaagcctagtaataagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccg 100  Q
    ||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||  |||||||||||||  ||||    |||||||||||||||     
T  1675761 ggcagagtgattaagtctattaatgagttcacaaaagggtttaaggaaattctttcttatagattgacaaagagaaggtag---ttgactaacatcacca 1675857  T
Q  101 tctccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgt 200  Q
    || |||||||||| |||||||||||||||||| ||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||| |||||||    
T  1675858 tcaccttctagtggtgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatccaaggcagttggacctcttgatttgagcaaacgtttgt 1675957  T
Q  201 gattgtattc 210  Q
    ||||||||||    
T  1675958 gattgtattc 1675967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 4618541 - 4618747
Alignment:
Q  4 agagtgattaagcctagtaataagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccgtct 103  Q
    |||||| ||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  4618541 agagtggttaagtcttgtaagaagttcacaatagggtttaaggaagttctttcttactgattgacaaagagttggtacatcttgactaacatcaccatca 4618640  T
Q  104 ccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgat 203  Q
    ||||| | || ||||| ||||||||| ||  | || ||| |||| || || |||||||| || || ||||||||||||||||||||||||||||||||||    
T  4618641 ccttccattggtgttaaaccatctggaatgctctcaaagttaaagtccgtgaaaccatcaaaagcctttggacctcttgatttgagcaagcgtttgtgat 4618740  T
Q  204 tgtattc 210  Q
    |||||||    
T  4618741 tgtattc 4618747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 4603350 - 4603556
Alignment:
Q  4 agagtgattaagcctagtaataagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccgtct 103  Q
    |||||||||||| || |||| |||||||||| ||||||||||||||||||||||||  |||||| ||| ||  ||||||||||||||||||| | | ||     
T  4603350 agagtgattaagtcttgtaagaagttcacaaaagggtttaaggaaattctttcttatagattgagaaatagaaggtacatcttgactaacattatcatca 4603449  T
Q  104 ccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgat 203  Q
    ||||| |  | |||||| ||||||||||||||||| |||||||||||||| || || ||||||||||| |||||||||||||||||||| ||||||||||    
T  4603450 ccttccatcggtgttagtccatctgggattgtttcaaagctaaaatcagtgaagccgtctaaggcattaggacctcttgatttgagcaaacgtttgtgat 4603549  T
Q  204 tgtattc 210  Q
    |||||||    
T  4603550 tgtattc 4603556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 4594250 - 4594456
Alignment:
Q  4 agagtgattaagcctagtaataagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccgtct 103  Q
    ||||| |||||| || |||| |||||||||| ||||||||||||||||||||||||  ||||||  |||||  ||||  ||||||||||||||||| ||     
T  4594250 agagtcattaagtcttgtaagaagttcacaaaagggtttaaggaaattctttcttatagattgagcaagagagggtatgtcttgactaacatcaccatca 4594349  T
Q  104 ccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgat 203  Q
    ||||| | || ||||||||||||||| || ||||| ||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  4594350 ccttccattggtgttagaccatctggtatggtttcaaagctaaaaccagggaaaccatctaaggcatttggacctcttgatttgagcaaacgtttatgat 4594449  T
Q  204 tgtattc 210  Q
    |||||||    
T  4594450 tgtattc 4594456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 4565266 - 4565475
Alignment:
Q  1 ggcagagtgattaagcctagtaataagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccg 100  Q
    |||||||| |||||| || |||| |||||||||| | |||||||||||||| |||||||  ||||||  |||||  |||||||||||||||||||||||     
T  4565266 ggcagagtcattaagtcttgtaagaagttcacaaaaaggtttaaggaaattttttcttatagattgagcaagagaaggtacatcttgactaacatcacca 4565365  T
Q  101 tctccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgt 200  Q
    || |||||||  | ||||||||||||||| || ||||| |||| |||| ||    ||||||||||||||||||||||||||||||| ||||| ||||| |    
T  4565366 tcaccttctatcggtgttagaccatctggtatggtttcaaagcaaaaaccacgggaaccatctaaggcatttggacctcttgattttagcaatcgtttat 4565465  T
Q  201 gattgtattc 210  Q
    ||||||||||    
T  4565466 gattgtattc 4565475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 61 - 210
Target Start/End: Complemental strand, 4489028 - 4488879
Alignment:
Q  61 tgattgacaaagagttggtacatcttgactaacatcaccgtctccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaacca 160  Q
    |||| |||||||||   ||| ||||||||||||||| || || || |||  ||  |||| ||||||||| || || || |||||||||||||| ||||||    
T  4489028 tgatagacaaagagcgcgtaaatcttgactaacatcgccatcaccatctgttggagttaaaccatctggaatagtctcaaagctaaaatcagttaaacca 4488929  T
Q  161 tctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||    
T  4488928 tcaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 4488879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 4627411 - 4627596
Alignment:
Q  25 aagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccgtctccttctagtgttgttagacca 124  Q
    |||||||| | |||| | |||||| |||||||||| ||||||  |||||| |||||  |||||| ||||||| || || |||||||||| ||||| ||||    
T  4627411 aagttcaccaaagggctgaaggaagttctttcttattgattgggaaagagatggtatgtcttgagtaacatcgccatcaccttctagtggtgttaaacca 4627510  T
Q  125 tctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    ||||| || || || ||| ||||||||   |||||||| |||||||||  |||||||||||||||||| |||||||||||||||||    
T  4627511 tctggtatggtctcaaaggtaaaatcatcgaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtgattgtattc 4627596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 4623568 - 4623753
Alignment:
Q  25 aagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccgtctccttctagtgttgttagacca 124  Q
    |||||||||| |||| | |  ||||||||| |||| ||| | | ||||||  ||||  ||||||||||||||||| || ||||| | || ||||| ||||    
T  4623568 aagttcacaaaagggatgatagaaattcttccttattgaatcagaaagagagggtatgtcttgactaacatcaccatcaccttccattggtgttaaacca 4623667  T
Q  125 tctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    ||||| || || || ||| |||| || || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  4623668 tctggaatggtctcaaagttaaagtccgtgaaaccatcaaaggcctttggacctcttgatttgagcaagcgtttgtgattgtattc 4623753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 4503102 - 4502975
Alignment:
Q  83 tcttgactaacatcaccgtctccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttg 182  Q
    ||||||||||||||||| || ||||| |  |  |||| ||||||||| || || || ||| |||||||| | |||||||| |||||||||||||||||||    
T  4503102 tcttgactaacatcaccatcaccttccaccggagttaaaccatctggtatggtctcaaaggtaaaatcattgaaaccatcaaaggcatttggacctcttg 4503003  T
Q  183 atttgagcaagcgtttgtgattgtattc 210  Q
    ||||||||||||||||||||||||||||    
T  4503002 atttgagcaagcgtttgtgattgtattc 4502975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 4517659 - 4517786
Alignment:
Q  83 tcttgactaacatcaccgtctccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttg 182  Q
    ||||||||||||||||| || |||||||  |  |||| ||||||||| || || || ||| |||||||||| |||||||| ||||| |||||||||||||    
T  4517659 tcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctcttg 4517758  T
Q  183 atttgagcaagcgtttgtgattgtattc 210  Q
    |||||||||| |||||||||||||||||    
T  4517759 atttgagcaaacgtttgtgattgtattc 4517786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 4581251 - 4581460
Alignment:
Q  1 ggcagagtgattaagcctagtaataagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccg 100  Q
    |||||||| |||||| |||| || |||||||||| | ||||  ||||| |||||||| | ||||| ||| ||||    ||  |||||| |||||||||      
T  4581251 ggcagagtcattaagtctagcaagaagttcacaaaaaggttgtaggaagttctttctgattgattcacatagagcatatatgtcttgattaacatcacta 4581350  T
Q  101 tctccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgt 200  Q
    || |||||||  |  |||| ||||||||| || || || ||| ||||||| || |||||||| || || |||||||||||||||||||||||||||||||    
T  4581351 tcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcggtgaaaccatcaaacgcttttggacctcttgatttgagcaagcgtttgt 4581450  T
Q  201 gattgtattc 210  Q
    ||||||||||    
T  4581451 gattgtattc 4581460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 4612492 - 4612400
Alignment:
Q  118 tagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    |||||||||||| || |  || ||| |||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  4612492 tagaccatctggtatagcctcaaaggtaaaatcagtgaaaccaacaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 4612400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 3173322 - 3173449
Alignment:
Q  83 tcttgactaacatcaccgtctccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttg 182  Q
    ||||||||||||||||| || ||||| | ||  |||| ||||||||| || || || ||| |||||||| | |||||||| ||||||||||||||  |||    
T  3173322 tcttgactaacatcaccatcaccttccattgaagttaaaccatctggtatagtctcaaagttaaaatcattgaaaccatcaaaggcatttggaccctttg 3173421  T
Q  183 atttgagcaagcgtttgtgattgtattc 210  Q
    |||||||||| |||||||||||||||||    
T  3173422 atttgagcaaccgtttgtgattgtattc 3173449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 4482217 - 4482311
Alignment:
Q  116 gttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    |||| ||||||||| || ||||| ||| |||||||||| |||||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||    
T  4482217 gttaaaccatctggtatcgtttcaaaggtaaaatcagtgaaaccatcaaaggcttttggaccccttgattttagcaaacgtttgtgattgtattc 4482311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 4507291 - 4507357
Alignment:
Q  144 taaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    |||||||||| |||||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  4507291 taaaatcagtgaaaccatcaaaggcattttcacctcttgatttgagcaagcgtttgtgattgtattc 4507357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 4558501 - 4558571
Alignment:
Q  140 aagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    |||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||    
T  4558501 aagctaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattc 4558571  T

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Target: chr6; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 4586951 - 4587078
Alignment:
Q  83 tcttgactaacatcaccgtctccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttg 182  Q
    ||||||||||||||||| || || ||   ||  |||| ||||||||| || || || |||||||||||||| ||| |||| |||||||||||| ||||||    
T  4586951 tcttgactaacatcaccatcaccatccgttggagttaaaccatctggaatagtctcaaagctaaaatcagttaaatcatcaaaggcatttggagctcttg 4587050  T
Q  183 atttgagcaagcgtttgtgattgtattc 210  Q
    | || ||||| |||||||||||||||||    
T  4587051 acttaagcaaccgtttgtgattgtattc 4587078  T

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Target: chr6; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 4575807 - 4575901
Alignment:
Q  116 gttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    |||| ||||||||| || || || ||| |||| ||||| |||||||| |||||||||  |||||||||||||||||| |||||||||||||||||    
T  4575807 gttaaaccatctggtatagtctcaaagttaaagtcagtgaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtgattgtattc 4575901  T

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Target: chr6; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 4259043 - 4258858
Alignment:
Q  25 aagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccgtctccttctagtgttgttagacca 124  Q
    |||||||| | |||| | |||||| ||||||||||  |||||| |||| |  ||||| |||||| ||||||| || || ||||| | ||  || ||||||    
T  4259043 aagttcaccaaagggctgaaggaagttctttcttatagattgagaaagggagggtacgtcttgagtaacatcgccatcaccttccactggagtcagacca 4258944  T
Q  125 tctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    ||| | || || || ||| |||||||| | |||||||| | |||||||  |||||||||||||||||| ||||||||||| |||||    
T  4258943 tcttgaatagtctcaaaggtaaaatcaatgaaaccatcaacggcattttcacctcttgatttgagcaaacgtttgtgattatattc 4258858  T

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Target: chr6; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 4569426 - 4569514
Alignment:
Q  116 gttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgatt 204  Q
    |||| ||||||||| || || || ||| |||||||||| |||||||| ||||| |||||||||||||||||||||||  ||||||||||    
T  4569426 gttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctcttgatttgagcaaatgtttgtgatt 4569514  T

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Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 4255545 - 4255491
Alignment:
Q  156 aaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  4255545 aaccatcaaaggcttttggacctcttgattcgagcaagcgtttgtgattgtattc 4255491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 4265833 - 4265739
Alignment:
Q  116 gttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    |||||||||||||| || || || ||  |||| ||| | |||||||| |  | ||||||||||||||||||||||||||||||||||||||||||    
T  4265833 gttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattc 4265739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 4513731 - 4513661
Alignment:
Q  140 aagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    |||| |||||| || |||||||| || ||||| |||||||||||||||||||| |||||||||||||||||    
T  4513731 aagcgaaaatcggtgaaaccatcaaaagcattaggacctcttgatttgagcaaacgtttgtgattgtattc 4513661  T

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Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 4572357 - 4572412
Alignment:
Q  155 aaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    |||||||| ||||||||| |||||||||| |||||||| |||||||||||||||||    
T  4572357 aaaccatcaaaggcattttgacctcttgacttgagcaaccgtttgtgattgtattc 4572412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 4562014 - 4562107
Alignment:
Q  116 gttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    |||| ||||||||| || || || ||| |||| ||||| |||||||| |||||||||  |||||||||||| ||||| |||||||||||||||||    
T  4562014 gttaaaccatctggtatagtctcaaagttaaagtcagtgaaaccatcaaaggcattttcacctcttgattt-agcaaacgtttgtgattgtattc 4562107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 4599489 - 4599606
Alignment:
Q  90 taacatcaccgtctccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaag-gcatttggacctcttgatttga 188  Q
    |||||||||| || || |||| ||  |||| ||||||||| || || ||||||  ||||||||| ||||||| || | | ||| ||||||||||||||||    
T  4599489 taacatcaccatcaccatctattggagttaaaccatctggaatagtctcgaaggaaaaatcagtgaaaccat-tacgagaattaggacctcttgatttga 4599587  T
Q  189 gcaagcgtttgtgattgta 207  Q
    |||||||||||||||||||    
T  4599588 gcaagcgtttgtgattgta 4599606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 4298365 - 4298180
Alignment:
Q  25 aagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccgtctccttctagtgttgttagacca 124  Q
    |||||||| | |||| | |||||| |||||||| | ||||||  |||||| |||||  |||||| ||||||| || || |||||   ||  || ||||||    
T  4298365 aagttcaccaaagggctgaaggaagttctttctgattgattgggaaagagatggtatgtcttgagtaacatctccatcaccttccgttggagtcagacca 4298266  T
Q  125 tctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    ||||| || || || |||||||| |  || |||||||| || || |||||||| ||||||| ||||| | ||||||||||||||||    
T  4298265 tctggaatagtctcaaagctaaagttggtgaaaccatcaaaagcttttggaccccttgattcgagcaggtgtttgtgattgtattc 4298180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 4483569 - 4483534
Alignment:
Q  174 gacctcttgatttgagcaagcgtttgtgattgtatt 209  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4483569 gacctcttgatttgagcaaacgtttgtgattgtatt 4483534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 4462587 - 4462653
Alignment:
Q  144 taaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    |||| ||||| ||||||||||  | ||| ||||||||||| ||||||||||  ||||||||||||||    
T  4462587 taaagtcagtgaaaccatctagagaattaggacctcttgaattgagcaagcaattgtgattgtattc 4462653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 3088006 - 3088191
Alignment:
Q  25 aagttcacaatagggtttaaggaaattctttcttactgattgacaaagagttggtacatcttgactaacatcaccgtctccttctagtgttgttagacca 124  Q
    |||||||| | |||||| || ||| |||||||  |||||||||||||||| ||  |  ||||||||||||||||| |  ||||| | ||  |||||||||    
T  3088006 aagttcaccaaagggttgaatgaagttctttccaactgattgacaaagagatgccaagtcttgactaacatcaccattaccttccattggagttagacca 3088105  T
Q  125 tctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    ||| |||| || || |||  ||||||||| |||||||| |  | ||| | |||||||||||| ||||| || ||||||||||||||    
T  3088106 tcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattc 3088191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 2176 - 2270
Alignment:
Q  116 gttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    |||| |||||| || || || ||||||| ||||||||  |||||||| |  ||||| |||||||||||||||||||||||||| |||||||||||    
T  2176 gttaaaccatcgggaatagtctcgaagcaaaaatcagcgaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgattgtattc 2270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 2227 - 2133
Alignment:
Q  116 gttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 210  Q
    |||| |||||| || || || ||||||| ||||||||  |||||||| |  ||||| |||||||||||||||||||||||||| |||||||||||    
T  2227 gttaaaccatcgggaatagtctcgaagcaaaaatcagcgaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgattgtattc 2133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 24104414 - 24104541
Alignment:
Q  83 tcttgactaacatcaccgtctccttctagtgttgttagaccatctgggattgtttcgaagctaaaatcagtcaaaccatctaaggcatttggacctcttg 182  Q
    |||||| |||||||||| |  ||||| | ||  |||||||||||||| || || || ||| |||| ||| | |||||||| |  | ||| ||| ||||||    
T  24104414 tcttgagtaacatcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcattgaaaccatcaagagaattaggatctcttg 24104513  T
Q  183 atttgagcaagcgtttgtgattgtattc 210  Q
    ||| ||||||||||||||||||||||||    
T  24104514 attcgagcaagcgtttgtgattgtattc 24104541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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