View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_low_3 (Length: 453)
Name: NF10301_low_3
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 56 - 445
Target Start/End: Complemental strand, 4033678 - 4033289
Alignment:
| Q |
56 |
caattcattttcccttatctagaatctgaagttgatcatgccagaagaaaaaacttacatatataaaaaagaaactaaggtatattctatctatggagtc |
155 |
Q |
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| T |
4033678 |
caattcattttcccttatctagaatctgaagttgttcatgccagaagaaaaaactaacatatataaaaaagaaactaaggtatattctatctatggagtc |
4033579 |
T |
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| Q |
156 |
tacttcaatcaactaacaaagaaggagacaaagtcattcaaatacggacaaattttagctttatgtcctttattagtttatttagttttctatgatatca |
255 |
Q |
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| T |
4033578 |
tacttcaatcaactaacaaagaaggagacaaagtcattcaaatacggacaaatttgagctttatgtcctttattagtttatttagttttctatgatatca |
4033479 |
T |
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| Q |
256 |
ccccattgatattaactaatttaacaccacttcctacataagcaatctattttgtcaatgtttgatcataagtcttaatcacaaaaaggtgtctgtgata |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4033478 |
ccccattgatattaactaatttaacaccacttcctacataagcaatctattttgtcaatgtttgatcataagtcttaatcacaaaaaggtgtctatgata |
4033379 |
T |
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| Q |
356 |
caagtaggaaaataattgaaggaattaaataattttcaaatactattagaactattcttgccaacaaatccctcaaaagagtgtgctttc |
445 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4033378 |
caagtaggaaaataattgaaggaatcaaataattttcaaatactattagaactattcttgccaacaaatccctcaaaagagtgtgctttc |
4033289 |
T |
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