View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_low_5 (Length: 390)

Name: NF10301_low_5
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_low_5
NF10301_low_5
[»] chr7 (1 HSPs)
chr7 (24-90)||(42460567-42460633)
[»] chr8 (1 HSPs)
chr8 (40-90)||(9935949-9935999)
[»] chr4 (1 HSPs)
chr4 (21-90)||(2281794-2281863)
[»] chr6 (2 HSPs)
chr6 (26-69)||(1033872-1033915)
chr6 (26-70)||(2921404-2921448)
[»] chr2 (1 HSPs)
chr2 (26-69)||(1479915-1479958)


Alignment Details
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 42460567 - 42460633
Alignment:
Q  24 gcccaagagaacgccgctactttggaaggagccggactcttccaaatcaaggtgaacaccccctcat 90  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  42460567 gcccaagagaacgtcactactttggaaggagccggactcttccaaatcgaggagaacaccccctcat 42460633  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 9935999 - 9935949
Alignment:
Q  40 ctactttggaaggagccggactcttccaaatcaaggtgaacaccccctcat 90  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  9935999 ctactttggaaggagccggactcttccaaatcgaggagaaaaccccctcat 9935949  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 2281863 - 2281794
Alignment:
Q  21 agagcccaagagaacgccgctactttggaaggagccggactcttccaaatcaaggtgaacaccccctcat 90  Q
    |||| |||||||||| || |||||||||| |||| |||||||||||||| ||||| ||| ||||||||||    
T  2281863 agagaccaagagaacaccactactttggatggagtcggactcttccaaagcaaggagaaaaccccctcat 2281794  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 1033915 - 1033872
Alignment:
Q  26 ccaagagaacgccgctactttggaaggagccggactcttccaaa 69  Q
    ||||||||||||| | ||||||||||||||||||||||||||||    
T  1033915 ccaagagaacgccacaactttggaaggagccggactcttccaaa 1033872  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 2921404 - 2921448
Alignment:
Q  26 ccaagagaacgccgctactttggaaggagccggactcttccaaat 70  Q
    ||||||||| ||| ||||||| || ||||||||||||||||||||    
T  2921404 ccaagagaaggccactactttagacggagccggactcttccaaat 2921448  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 1479915 - 1479958
Alignment:
Q  26 ccaagagaacgccgctactttggaaggagccggactcttccaaa 69  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||    
T  1479915 ccaagagaaggccactactttggaaggagccgaactcttccaaa 1479958  T

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