View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10301_low_7 (Length: 372)

Name: NF10301_low_7
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10301_low_7
NF10301_low_7
[»] chr2 (25 HSPs)
chr2 (15-136)||(43073907-43074028)
chr2 (198-265)||(43074026-43074094)
chr2 (163-228)||(1763264-1763329)
chr2 (163-228)||(12110918-12110983)
chr2 (173-228)||(13482116-13482171)
chr2 (175-222)||(37402191-37402238)
chr2 (184-222)||(3654787-3654825)
chr2 (163-228)||(23359928-23359994)
chr2 (162-215)||(1945051-1945104)
chr2 (164-216)||(14443217-14443269)
chr2 (162-226)||(27310072-27310135)
chr2 (162-217)||(7632859-7632914)
chr2 (68-119)||(29823493-29823544)
chr2 (164-215)||(31224725-31224776)
chr2 (68-119)||(37561691-37561742)
chr2 (162-228)||(10618879-10618945)
chr2 (162-228)||(11759788-11759854)
chr2 (185-226)||(6767788-6767829)
chr2 (162-215)||(7296198-7296251)
chr2 (162-215)||(9988513-9988566)
chr2 (162-215)||(34433318-34433371)
chr2 (188-228)||(6737683-6737723)
chr2 (169-225)||(13487515-13487571)
chr2 (169-224)||(27297391-27297444)
chr2 (145-217)||(32307157-32307229)
[»] chr8 (17 HSPs)
chr8 (168-251)||(40991552-40991635)
chr8 (162-228)||(1373081-1373147)
chr8 (162-217)||(43550933-43550988)
chr8 (163-217)||(19649229-19649283)
chr8 (163-228)||(31246315-31246381)
chr8 (162-215)||(22936807-22936860)
chr8 (163-228)||(29970845-29970910)
chr8 (164-228)||(36779435-36779499)
chr8 (162-217)||(15206738-15206793)
chr8 (165-228)||(38516343-38516406)
chr8 (159-228)||(1836141-1836210)
chr8 (164-228)||(30081651-30081715)
chr8 (167-228)||(38715210-38715271)
chr8 (162-215)||(40742166-40742219)
chr8 (162-215)||(41289072-41289125)
chr8 (188-228)||(5400142-5400182)
chr8 (188-228)||(40998354-40998394)
[»] chr7 (19 HSPs)
chr7 (125-228)||(40795918-40796021)
chr7 (167-215)||(38494276-38494324)
chr7 (163-228)||(42752178-42752244)
chr7 (162-215)||(38230123-38230176)
chr7 (162-215)||(48459765-48459818)
chr7 (160-215)||(10371959-10372014)
chr7 (78-137)||(17111852-17111910)
chr7 (174-228)||(7169007-7169061)
chr7 (162-228)||(15311204-15311270)
chr7 (162-215)||(3342845-3342898)
chr7 (162-215)||(3622461-3622514)
chr7 (162-215)||(3750741-3750794)
chr7 (162-215)||(29829311-29829364)
chr7 (162-215)||(37562625-37562678)
chr7 (164-228)||(39634152-39634217)
chr7 (187-224)||(44003235-44003272)
chr7 (162-215)||(44967400-44967453)
chr7 (187-223)||(39005763-39005799)
chr7 (78-122)||(45821725-45821769)
[»] chr1 (23 HSPs)
chr1 (163-228)||(4347033-4347098)
chr1 (124-230)||(48832942-48833048)
chr1 (163-228)||(47981797-47981862)
chr1 (155-216)||(10324559-10324620)
chr1 (167-228)||(13344836-13344897)
chr1 (162-215)||(20800292-20800345)
chr1 (162-215)||(35569217-35569270)
chr1 (162-215)||(48510966-48511019)
chr1 (164-228)||(13905575-13905639)
chr1 (164-228)||(40352451-40352515)
chr1 (166-228)||(5407902-5407965)
chr1 (185-228)||(47307511-47307554)
chr1 (162-228)||(3515897-3515963)
chr1 (162-215)||(1199885-1199938)
chr1 (172-217)||(10173239-10173284)
chr1 (162-215)||(15884285-15884338)
chr1 (162-215)||(25230065-25230117)
chr1 (162-215)||(31223432-31223485)
chr1 (162-215)||(42850234-42850287)
chr1 (162-215)||(49242997-49243050)
chr1 (164-228)||(18325318-18325382)
chr1 (163-219)||(29759710-29759766)
chr1 (169-228)||(47085898-47085958)
[»] chr6 (9 HSPs)
chr6 (164-224)||(10874213-10874273)
chr6 (172-218)||(19601879-19601925)
chr6 (187-228)||(9043733-9043774)
chr6 (162-215)||(16442364-16442417)
chr6 (162-215)||(16548173-16548226)
chr6 (168-228)||(10054993-10055053)
chr6 (81-118)||(7486422-7486459)
chr6 (162-218)||(1312450-1312506)
chr6 (183-227)||(15093272-15093315)
[»] chr4 (26 HSPs)
chr4 (162-228)||(38740303-38740369)
chr4 (168-228)||(48575480-48575540)
chr4 (162-215)||(16566324-16566377)
chr4 (162-215)||(53531996-53532049)
chr4 (171-215)||(37500220-37500264)
chr4 (68-119)||(11271587-11271638)
chr4 (164-258)||(36150625-36150720)
chr4 (186-228)||(12224472-12224514)
chr4 (163-228)||(22699762-22699828)
chr4 (163-228)||(22980702-22980768)
chr4 (163-228)||(22994289-22994355)
chr4 (163-228)||(38306031-38306097)
chr4 (163-213)||(50357990-50358040)
chr4 (163-228)||(54488625-54488691)
chr4 (162-228)||(55927699-55927765)
chr4 (162-215)||(6138634-6138687)
chr4 (162-215)||(13167544-13167597)
chr4 (183-216)||(24370233-24370266)
chr4 (162-215)||(26617283-26617336)
chr4 (162-215)||(26651862-26651915)
chr4 (162-215)||(32238073-32238125)
chr4 (162-215)||(39438880-39438933)
chr4 (162-215)||(46830083-46830136)
chr4 (164-228)||(48550427-48550492)
chr4 (162-215)||(51922959-51923012)
chr4 (192-228)||(8283592-8283628)
[»] scaffold0172 (1 HSPs)
scaffold0172 (163-228)||(15258-15323)
[»] chr3 (24 HSPs)
chr3 (164-217)||(42644298-42644351)
chr3 (163-228)||(44225600-44225665)
chr3 (164-228)||(41115291-41115355)
chr3 (162-215)||(39981119-39981171)
chr3 (162-215)||(50664792-50664845)
chr3 (163-228)||(52925552-52925617)
chr3 (163-215)||(7012675-7012727)
chr3 (163-215)||(23496352-23496404)
chr3 (162-218)||(34561142-34561198)
chr3 (163-222)||(21023222-21023281)
chr3 (162-228)||(23207068-23207135)
chr3 (162-228)||(31084241-31084308)
chr3 (167-228)||(10852713-10852775)
chr3 (185-227)||(26736353-26736395)
chr3 (162-228)||(31766176-31766242)
chr3 (166-228)||(38626750-38626812)
chr3 (162-228)||(48089619-48089685)
chr3 (162-224)||(52931577-52931639)
chr3 (187-228)||(49634015-49634056)
chr3 (188-228)||(584722-584762)
chr3 (147-215)||(41114991-41115059)
chr3 (188-228)||(50427188-50427228)
chr3 (188-224)||(53078418-53078454)
chr3 (183-215)||(55154556-55154588)
[»] scaffold0015 (1 HSPs)
scaffold0015 (164-228)||(65536-65600)
[»] chr5 (20 HSPs)
chr5 (124-228)||(29923294-29923396)
chr5 (164-215)||(2483725-2483776)
chr5 (165-224)||(2868355-2868414)
chr5 (162-216)||(9861131-9861185)
chr5 (165-215)||(19784864-19784914)
chr5 (163-228)||(621292-621357)
chr5 (78-119)||(1102128-1102169)
chr5 (162-215)||(22482237-22482290)
chr5 (163-215)||(22811075-22811127)
chr5 (162-218)||(38045315-38045371)
chr5 (164-228)||(42439250-42439314)
chr5 (167-226)||(3748951-3749010)
chr5 (186-228)||(5465399-5465441)
chr5 (167-217)||(27021181-27021231)
chr5 (162-228)||(29922990-29923056)
chr5 (162-215)||(4292197-4292250)
chr5 (187-228)||(6988235-6988276)
chr5 (164-217)||(28304812-28304865)
chr5 (172-221)||(40907573-40907622)
chr5 (162-202)||(10372988-10373028)
[»] scaffold0248 (1 HSPs)
scaffold0248 (164-228)||(13276-13340)
[»] scaffold0361 (1 HSPs)
scaffold0361 (124-227)||(14044-14147)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 43073907 - 43074028
Alignment:
Q  15 gaaccaaatgattcagtgtatgtttagtttcaaagtggggagagccagaagtaattttgcctatagaattgattttaacttgaaactaagatttgtagct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43073907 gaaccaaatgattcagtgtatgtttagtttcaaagtggggagagccagaagtaattttgcctatagaattgattttaacttgaaactaagatttgtagct 43074006  T
Q  115 tttgattcatacactcaaattt 136  Q
    ||||||||||||||||||||||    
T  43074007 tttgattcatacactcaaattt 43074028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 43074026 - 43074094
Alignment:
Q  198 ttttaactaaaatcaattt-tacaaaatcaatacttgttgctgcataaccgaacacacacttagttgag 265  Q
    ||||||||||||||||||  | | ||||||||| |||||||||||||||||||||||||||||||||||    
T  43074026 ttttaactaaaatcaattaattcgaaatcaatatttgttgctgcataaccgaacacacacttagttgag 43074094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 1763264 - 1763329
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||| ||||||||| ||| | | |||||||||| ||||||| |||||||||||||||||||||||    
T  1763264 gtatctaaacataaatcactttaaattcaactcaattttaaccaaaatcaattttacaaaatcaat 1763329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 12110918 - 12110983
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||||||| ||| | | |||||||||| ||||||| ||||||||||| |||||||||||    
T  12110918 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaat 12110983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 13482116 - 13482171
Alignment:
Q  173 ataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||| |||||||||||||||||||||| || |||||| | |||||||||||||||    
T  13482116 ataaatcacatcacattcaactcattttgaattaaaattatttttacaaaatcaat 13482171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 37402238 - 37402191
Alignment:
Q  175 aaaccacatcacattcaactcatttttaactaaaatcaattttacaaa 222  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||||    
T  37402238 aaaccacttcacattcaactcacttttaactagaatcaattttacaaa 37402191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 3654825 - 3654787
Alignment:
Q  184 cacattcaactcatttttaactaaaatcaattttacaaa 222  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  3654825 cacattcaactcacttttaactaaaatcaattttacaaa 3654787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 23359994 - 23359928
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttta-caaaatcaat 228  Q
    ||||||||||||||| ||| | |||||||||||| ||||||| |||||||||| || ||||||||||    
T  23359994 gtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctaccaaaatcaat 23359928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 1945104 - 1945051
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  1945104 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 1945051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 14443269 - 14443217
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattt 216  Q
    |||||||||||||||||  |||||||||||||||||  || ||||||||||||    
T  14443269 tatccaaacataaaccatttcacattcaactcatttcgaagtaaaatcaattt 14443217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 27310135 - 27310072
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatca 226  Q
    ||||||||||||||||| || |||| ||||||| | ||| ||||||||| |||||||||||||||    
T  27310135 tgtatccaaacataaac-acttcacgttcaactaactttgaactaaaattaattttacaaaatca 27310072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 7632859 - 7632914
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttt 217  Q
    ||||||||||| |||||||| | | |||||| ||| ||||||||||||||||||||    
T  7632859 tgtatccaaacgtaaaccactttaaattcaaatcacttttaactaaaatcaatttt 7632914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 29823493 - 29823544
Alignment:
Q  68 attttgcctatagaattgattttaacttgaaactaagatttgtagcttttga 119  Q
    ||||||||| || ||||||||  |||||||| ||||||||||||||||||||    
T  29823493 attttgcctctaaaattgattcaaacttgaatctaagatttgtagcttttga 29823544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 31224725 - 31224776
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||| ||  |||||| ||||||| ||||||||||||||||||    
T  31224725 tatccaaacataaatcaattcacatccaactcacttttaactaaaatcaatt 31224776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 37561691 - 37561742
Alignment:
Q  68 attttgcctatagaattgattttaacttgaaactaagatttgtagcttttga 119  Q
    ||||||||| || |||||||| ||||||||||||| |||||||| |||||||    
T  37561691 attttgcctctataattgattctaacttgaaactacgatttgtaccttttga 37561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 10618945 - 10618879
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||| |||||||||  ||| | || ||||| ||||||||| ||| |||||||||||||||||||||    
T  10618945 tgtatacaaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaat 10618879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 11759854 - 11759788
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||| |||||| ||||||  | || ||||||||| ||||||  |||||||||||||||||||||||    
T  11759854 tgtatacaaacacaaaccaatttaccttcaactcacttttaatcaaaatcaattttacaaaatcaat 11759788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 6767788 - 6767829
Alignment:
Q  185 acattcaactcatttttaactaaaatcaattttacaaaatca 226  Q
    |||||||||||||||||||  | |||||||||||||||||||    
T  6767788 acattcaactcatttttaatcacaatcaattttacaaaatca 6767829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 7296198 - 7296251
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  ||||||  |||||||||||||| ||||||||||    
T  7296198 tgtatccaaacataaatcaattcacatcaaactcatttttaaccaaaatcaatt 7296251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 9988566 - 9988513
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||||    
T  9988566 tgtatccaaacataaatcaattcacatccaactcacttttaacaaaaatcaatt 9988513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 34433371 - 34433318
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||  ||||||||||    
T  34433371 tgtatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaatt 34433318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 6737683 - 6737723
Alignment:
Q  188 ttcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||||||||| |||||||||  ||||||||||||    
T  6737683 ttcaactcatttttaaccaaaatcaatgctacaaaatcaat 6737723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 13487515 - 13487571
Alignment:
Q  169 aaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatc 225  Q
    ||||||||| || |||||| ||| |||||||||||||||||| | ||| ||||||||    
T  13487515 aaacataaatcatatcacaatcatctcatttttaactaaaattattttaacaaaatc 13487571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 27297391 - 27297444
Alignment:
Q  169 aaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaat 224  Q
    |||||||||| |||| ||| |||||| |||||||||||||||  ||||||||||||    
T  27297391 aaacataaactacattacactcaactaatttttaactaaaat--attttacaaaat 27297444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 32307157 - 32307229
Alignment:
Q  145 actcactttaatgcgactgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttt 217  Q
    ||||||||| ||| || | |||||||| |||| |||  | |||||| ||||| ||||||||||||||||||||    
T  32307157 actcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaatttt 32307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 40991635 - 40991552
Alignment:
Q  168 caaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaatacttgttgctgcataaccgaaca 251  Q
    ||||||||||| || | ||||||||||||||||||| |||||||| |||||||||||||||  ||||| | |||||||| ||||    
T  40991635 caaacataaacaactttacattcaactcatttttaagtaaaatcatttttacaaaatcaatttttgttaccgcataaccaaaca 40991552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 1373081 - 1373147
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||||||| ||| |||  ||||||||| ||||| | |||||||||||||||||||||||    
T  1373081 tgtatccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaat 1373147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 43550933 - 43550988
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttt 217  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||||    
T  43550933 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatttt 43550988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 19649229 - 19649283
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttt 217  Q
    ||||||||||||||| ||| | |||||||||||| ||||||| ||||||||||||    
T  19649229 gtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaatttt 19649283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 31246381 - 31246315
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt-ttacaaaatcaat 228  Q
    ||||||||||||||| ||  |||||||||||||| ||||||| |||||||||| | |||||||||||    
T  31246381 gtatccaaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaat 31246315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 22936860 - 22936807
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  22936860 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 22936807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 29970845 - 29970910
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||||||| ||| | | | |||||||| |||||||||||||||||| |||||| |||||    
T  29970845 gtatccaaacataaatcactttaaactcaactcacttttaactaaaatcaattatacaaattcaat 29970910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 36779435 - 36779499
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||||||  || | |||||||||||| ||||||  |||||||||| ||||||||||||    
T  36779435 tatccaaacataaattactttacattcaactcacttttaatcaaaatcaattctacaaaatcaat 36779499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 15206738 - 15206793
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttt 217  Q
    |||||||||||||||| ||  |||||||||||||| ||||| | ||||||||||||    
T  15206738 tgtatccaaacataaatcaattcacattcaactcacttttacccaaaatcaatttt 15206793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 38516343 - 38516406
Alignment:
Q  165 atccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||||| ||| | |||||||||||| | ||| | |||||||||| ||||||||||||    
T  38516343 atccaaacataaatcactttacattcaactcactattatcgaaaatcaattctacaaaatcaat 38516406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 1836210 - 1836141
Alignment:
Q  159 gactgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||| ||||||||||||||  || ||||||||||| || |||  | ||||||||||| ||||||||||||    
T  1836210 gactatatccaaacataaataacttcacattcaacccactttagattaaaatcaattctacaaaatcaat 1836141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 30081715 - 30081651
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttt-acaaaatcaat 228  Q
    |||||||||||||| ||  |||| || |||||| |||||||||||||||||||| |||||||||||    
T  30081715 tatccaaacataaatcaattcacttt-aactcacttttaactaaaatcaattttcacaaaatcaat 30081651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 38715271 - 38715210
Alignment:
Q  167 ccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||| ||| | ||| | |||||| |||||||||||||||||| | ||||||||||    
T  38715271 ccaaacataaatcactttacacttaactcaattttaactaaaatcaattctgcaaaatcaat 38715210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 40742166 - 40742219
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||||    
T  40742166 tgtatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaatt 40742219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 41289125 - 41289072
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  ||||| |||||||| |||||| |||||||||||    
T  41289125 tgtatccaaacataaatcaattcacaatcaactcacttttaattaaaatcaatt 41289072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 5400182 - 5400142
Alignment:
Q  188 ttcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||| ||||| | |||||||||||||||||||||||    
T  5400182 ttcaactcacttttagcaaaaatcaattttacaaaatcaat 5400142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 40998394 - 40998354
Alignment:
Q  188 ttcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||||||| || ||||||||||| |||||||||    
T  40998394 ttcaactcatttttaattagaatcaattttataaaatcaat 40998354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 125 - 228
Target Start/End: Complemental strand, 40796021 - 40795918
Alignment:
Q  125 acactcaaatttactattttactcactttaatgcgactgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaat 224  Q
    ||||||||||||||||||  | ||||||| |   || ||||||||| |||||||||| | || ||||| ||||||||| |||| ||||||||||||||||    
T  40796021 acactcaaatttactattcaaatcacttttacatgaatgtatccaatcataaaccactttaccttcaattcatttttacctaacatcaattttacaaaat 40795922  T
Q  225 caat 228  Q
    ||||    
T  40795921 caat 40795918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 38494276 - 38494324
Alignment:
Q  167 ccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  38494276 ccaaacataaaccacttcacattcaactcacttttaaccaaaatcaatt 38494324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 42752244 - 42752178
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt-ttacaaaatcaat 228  Q
    ||||||||||||||| ||  |||||||||||||| ||||||| |||||||||| | |||||||||||    
T  42752244 gtatccaaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaat 42752178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 38230123 - 38230176
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  38230123 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 38230176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 48459765 - 48459818
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  48459765 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 48459818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 10372014 - 10371959
Alignment:
Q  160 actgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||| ||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  10372014 actgtaaccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 10371959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 17111852 - 17111910
Alignment:
Q  78 tagaattgattttaacttgaaactaagatttgtagcttttgattcatacactcaaattta 137  Q
    ||||||||||| || |||||| ||| ||||||||||||||||||| ||||| ||||||||    
T  17111852 tagaattgattcta-cttgaagctatgatttgtagcttttgattcttacacacaaattta 17111910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 7169007 - 7169061
Alignment:
Q  174 taaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||| | |||||||||||| ||||||| ||||||||||| | |||||||||    
T  7169007 taaaccactttacattcaactcacttttaaccaaaatcaatttcaaaaaatcaat 7169061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 15311270 - 15311204
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||||||| |||   |||||||||||| ||||||| | | ||||||||||| |||||||    
T  15311270 tgtatccaaacataaatcactatacattcaactcacttttaaccatattcaattttacacaatcaat 15311204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 3342845 - 3342898
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  ||| || ||||||| ||||||||||||||||||    
T  3342845 tgtatccaaacataaatcaattcatatccaactcacttttaactaaaatcaatt 3342898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 3622514 - 3622461
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||||    
T  3622514 tgtatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaatt 3622461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 3750741 - 3750794
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||||    
T  3750741 tgtatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaatt 3750794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 29829364 - 29829311
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||| | |||||||||||||||||| | | ||||||||    
T  29829364 tgtatccaaacataaatcactttacattcaactcatttttagccagaatcaatt 29829311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 37562625 - 37562678
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||||    
T  37562625 tgtatccaaacataaatcaattcacatccaactcacttttaacaaaaatcaatt 37562678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 39634217 - 39634152
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt-ttacaaaatcaat 228  Q
    |||||||||||||| ||  ||| |||||||||| ||||||| |||||||||| | |||||||||||    
T  39634217 tatccaaacataaatcaattcatattcaactcacttttaaccaaaatcaattctaacaaaatcaat 39634152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 44003235 - 44003272
Alignment:
Q  187 attcaactcatttttaactaaaatcaattttacaaaat 224  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  44003235 attcatctcatttttaactaaaatcaattttataaaat 44003272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 44967453 - 44967400
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    ||||| |||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  44967453 tgtattcaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 44967400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 39005763 - 39005799
Alignment:
Q  187 attcaactcatttttaactaaaatcaattttacaaaa 223  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  39005763 attcaactcaattttaaccaaaatcaattttacaaaa 39005799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 45821769 - 45821725
Alignment:
Q  78 tagaattgattttaacttgaaactaagatttgtagcttttgattc 122  Q
    ||||||||||||||  ||||| ||| |||||||||||||||||||    
T  45821769 tagaattgattttaggttgaagctatgatttgtagcttttgattc 45821725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 4347033 - 4347098
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||||||| ||| | |||||||||||| ||||||| |||||||||| ||||||||||||    
T  4347033 gtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaatcaat 4347098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 48832942 - 48833048
Alignment:
Q  124 tacactcaaatttactattttactcactttaatgcgactgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaa 223  Q
    |||||||||||||| ||||  |||||| || ||| || | ||||| |||||||||||| | |||||||||||| ||||||||| | |  |||||||||||    
T  48832942 tacactcaaatttattattgaactcacgtttatgtgaatatatccgaacataaaccacttaacattcaactcacttttaactatagtttattttacaaaa 48833041  T
Q  224 tcaatac 230  Q
    | |||||    
T  48833042 taaatac 48833048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 47981862 - 47981797
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||||||| ||| | | |||||||||| ||||||| ||||| |||||||||||||||||    
T  47981862 gtatccaaacataaatcactttaaattcaactcaattttaaccaaaattaattttacaaaatcaat 47981797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 10324559 - 10324620
Alignment:
Q  155 atgcgactgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattt 216  Q
    |||||| |||||||||| ||||||||| | |||||||||||  || ||||||||||||||||    
T  10324559 atgcgaatgtatccaaatataaaccactttacattcaactcccttataactaaaatcaattt 10324620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 13344836 - 13344897
Alignment:
Q  167 ccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||| ||| | || ||||||||| ||||||| |||||||||| ||||||||||||    
T  13344836 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattctacaaaatcaat 13344897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 20800345 - 20800292
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  20800345 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 20800292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 35569270 - 35569217
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  35569270 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 35569217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 48510966 - 48511019
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  48510966 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 48511019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 13905639 - 13905575
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||||||||  |||||||||||||   || ||||||||||| |||||||| ||||||    
T  13905639 tatccaaacataaaccaattcacattcaactcgcattcaactaaaatcagttttacaatatcaat 13905575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 40352451 - 40352515
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||||| ||| | ||||| |||||| ||||||| ||||||||||  |||||||||||    
T  40352451 tatccaaacataaatcactttacattaaactcacttttaaccaaaatcaattccacaaaatcaat 40352515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 5407902 - 5407965
Alignment:
Q  166 tccaaacataaaccacatcacattcaactca-tttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||| ||| |||||||||| ||| ||||| || ||||||| |||||||||||||||    
T  5407902 tccaaacataaatcacttcacattcaattcactttttcaccaaaatcatttttacaaaatcaat 5407965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 47307511 - 47307554
Alignment:
Q  185 acattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||    
T  47307511 acattcaactcacttttaactaaagtcaattttataaaatcaat 47307554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 3515897 - 3515963
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||| ||| ||| |||| ||||||||| |||| || | ||||||||||||| |||||||    
T  3515897 tgtatccaaacacaaatcacttcaccttcaactcaattttcaccagaatcaattttacataatcaat 3515963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 1199885 - 1199938
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||| ||||    
T  1199885 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaattaatt 1199938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 10173239 - 10173284
Alignment:
Q  172 cataaaccacatcacattcaactcatttttaactaaaatcaatttt 217  Q
    |||||| ||| |||||||||||||||||| ||||||||||| ||||    
T  10173239 cataaatcacttcacattcaactcattttgaactaaaatcattttt 10173284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 15884285 - 15884338
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||||    
T  15884285 tgtatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaatt 15884338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 25230065 - 25230117
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    ||||||||||||||| | |  |||||||||||||| ||||||||||||||||||    
T  25230065 tgtatccaaacataatcaat-tcacattcaactcacttttaactaaaatcaatt 25230117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 31223432 - 31223485
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||||    
T  31223432 tgtatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaatt 31223485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 42850287 - 42850234
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||||    
T  42850287 tgtatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaatt 42850234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 49243050 - 49242997
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    ||||| |||||||||| ||  |||||| ||||||||||||||| ||||||||||    
T  49243050 tgtattcaaacataaatcaattcacatccaactcatttttaaccaaaatcaatt 49242997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 18325382 - 18325318
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||| ||||| ||||||  | |||||||||||| |||||  ||||||||||||||||||| ||||    
T  18325382 tatctaaacagaaaccattttacattcaactcacttttatgtaaaatcaattttacaaaaccaat 18325318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 29759710 - 29759766
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttac 219  Q
    ||||||||||||||| ||  | |||||||||||| ||||||| | ||||||||||||    
T  29759710 gtatccaaacataaatcattttacattcaactcacttttaaccataatcaattttac 29759766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 47085898 - 47085958
Alignment:
Q  169 aaacataaaccacatcacattcaactcatttttaactaaaatcaatttta-caaaatcaat 228  Q
    ||||||||| ||  |||||||||||||| |||||| ||||||||||| || ||||||||||    
T  47085898 aaacataaatcaattcacattcaactcacttttaattaaaatcaattctatcaaaatcaat 47085958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 10874273 - 10874213
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaat 224  Q
    |||||||||||||||||| ||||||||||||||  |||| |||||||||||| ||||||||    
T  10874273 tatccaaacataaaccacttcacattcaactcacatttacctaaaatcaattatacaaaat 10874213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 19601925 - 19601879
Alignment:
Q  172 cataaaccacatcacattcaactcatttttaactaaaatcaatttta 218  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||    
T  19601925 cataaaccacttcacattcaactcaattttaactaaaatcaatttta 19601879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 9043774 - 9043733
Alignment:
Q  187 attcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||| |||||||||||||||||| ||||||||||||    
T  9043774 attcaactcacttttaactaaaatcaattatacaaaatcaat 9043733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 16442417 - 16442364
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| || |||||||||||||||    
T  16442417 tgtatccaaacataaatcaattcacattcaactcacttgtaactaaaatcaatt 16442364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 16548173 - 16548226
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  16548173 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 16548226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 10055053 - 10054993
Alignment:
Q  168 caaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||||| | |||  ||||||| |||||||||| ||||||||||||||| ||||    
T  10055053 caaacataaaccactttacaagcaactcaattttaactaatatcaattttacaaaaccaat 10054993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 7486422 - 7486459
Alignment:
Q  81 aattgattttaacttgaaactaagatttgtagcttttg 118  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  7486422 aattgattttaacttgaaactatgatttgtagtttttg 7486459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 1312506 - 1312450
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttta 218  Q
    ||||||| |||||||| ||  || ||||||||||| ||||||| |||||||||||||    
T  1312506 tgtatccgaacataaatcaattcgcattcaactcacttttaaccaaaatcaatttta 1312450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 15093272 - 15093315
Alignment:
Q  183 tcacattcaactcatttttaactaaaatcaattttacaaaatcaa 227  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||    
T  15093272 tcacattcaactcatttttaact-aaattaatcttacaaaatcaa 15093315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 38740369 - 38740303
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||||||| ||| |||  ||||||||| ||||| | |||||||||||||||||||||||    
T  38740369 tgtatccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaat 38740303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 48575480 - 48575540
Alignment:
Q  168 caaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||| ||||||||  | |||||||||||||||||| | |||||||||||||||||||||||    
T  48575480 caaaaataaaccattttacattcaactcatttttatcaaaaatcaattttacaaaatcaat 48575540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 16566324 - 16566377
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  16566324 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 16566377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 53531996 - 53532049
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||| ||||||||||||||| | |||| ||||||| ||||||||||||||||||    
T  53531996 tgtagccaaacataaaccacgttacatccaactcacttttaactaaaatcaatt 53532049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 37500264 - 37500220
Alignment:
Q  171 acataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||    
T  37500264 acatgaaccacctcacattcaactcaattttaactaaaatcaatt 37500220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 11271638 - 11271587
Alignment:
Q  68 attttgcctatagaattgattttaacttgaaactaagatttgtagcttttga 119  Q
    |||||||||  |||||||||| ||||||||| ||| ||||||||||||||||    
T  11271638 attttgcctccagaattgattctaacttgaagctaggatttgtagcttttga 11271587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 36150625 - 36150720
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttta-caaaatcaatacttgttgctgcataaccgaacacacactt 258  Q
    |||||||||||||| ||| | |||||||||||| ||||||  |||||||||| || |||||||||| || ||  | ||| |||| |||||||||||    
T  36150625 tatccaaacataaatcactttacattcaactcacttttaatcaaaatcaattatatcaaaatcaattctcgtcaccgcacaaccaaacacacactt 36150720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 12224472 - 12224514
Alignment:
Q  186 cattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||| | ||||||||||||| |||||||||||||||||    
T  12224472 cattcaacttacttttaactaaaataaattttacaaaatcaat 12224514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 22699762 - 22699828
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttta-caaaatcaat 228  Q
    ||||||||||||||| ||| | |||||||||| | ||||||| |||||||||| || ||||||||||    
T  22699762 gtatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaat 22699828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 22980768 - 22980702
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttta-caaaatcaat 228  Q
    ||||||||||||||| ||| | |||||||||| | ||||||| |||||||||| || ||||||||||    
T  22980768 gtatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaat 22980702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 22994355 - 22994289
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttta-caaaatcaat 228  Q
    ||||||||||||||| ||| | |||||||||| | ||||||| |||||||||| || ||||||||||    
T  22994355 gtatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaat 22994289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 38306031 - 38306097
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt-ttacaaaatcaat 228  Q
    ||||||||||||||| ||  || ||||||||||| ||||||| |||||||||| | |||||||||||    
T  38306031 gtatccaaacataaatcaattcgcattcaactcacttttaacaaaaatcaattctaacaaaatcaat 38306097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 50358040 - 50357990
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaa 213  Q
    ||||||||||||| ||||| |  ||||||||||| ||||||||||||||||    
T  50358040 gtatccaaacatagaccactttgcattcaactcacttttaactaaaatcaa 50357990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 54488625 - 54488691
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt-ttacaaaatcaat 228  Q
    |||| |||||||||| ||  |||||||||||||| ||||||| |||||||||| | |||||||||||    
T  54488625 gtattcaaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaat 54488691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 55927765 - 55927699
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||||||| ||||| |  | ||||||| ||||||||  |||||||||||| ||||||||    
T  55927765 tgtatccaaacataaatcacattaactccaactcaattttaactggaatcaattttacgaaatcaat 55927699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 6138687 - 6138634
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||||    
T  6138687 tgtatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaatt 6138634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 13167544 - 13167597
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||| ||||| ||  |||||||||||||| ||||||| ||||||||||    
T  13167544 tgtatccaaatataaatcaattcacattcaactcacttttaaccaaaatcaatt 13167597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 24370266 - 24370233
Alignment:
Q  183 tcacattcaactcatttttaactaaaatcaattt 216  Q
    ||||||||||||||||||||||| ||||||||||    
T  24370266 tcacattcaactcatttttaacttaaatcaattt 24370233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 26617336 - 26617283
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||| |||||| ||| || | |||||||||||| ||||||||||||||||||    
T  26617336 tgtatcgaaacatgaactactttacattcaactcacttttaactaaaatcaatt 26617283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 26651915 - 26651862
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||| ||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  26651915 tgtatctaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 26651862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 32238125 - 32238073
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    ||||||||||||||| |||  |||||||||||||| ||||||| ||||||||||    
T  32238125 tgtatccaaacataa-ccaattcacattcaactcacttttaaccaaaatcaatt 32238073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 39438880 - 39438933
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    ||||| ||||||||||| || |||||||||||||| |||||| |||||| ||||    
T  39438880 tgtatacaaacataaacaacttcacattcaactcacttttaagtaaaattaatt 39438933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 46830136 - 46830083
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||||    
T  46830136 tgtatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaatt 46830083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 48550492 - 48550427
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttta-caaaatcaat 228  Q
    |||||||||||||| ||  |||||| ||||||| ||||||| |||||||||| || ||||||||||    
T  48550492 tatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaattctatcaaaatcaat 48550427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 51922959 - 51923012
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  ||| |||||||||| ||||||| ||||||||||    
T  51922959 tgtatccaaacataaatcaattcagattcaactcacttttaaccaaaatcaatt 51923012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 8283628 - 8283592
Alignment:
Q  192 actcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  8283628 actcacttttaagtaaaatcaattttacaaaatcaat 8283592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 15323 - 15258
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||||||| ||| | | |||||||||| ||||||| ||||||||||| |||||||||||    
T  15323 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaat 15258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 42644298 - 42644351
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttt 217  Q
    |||||||||||||| ||| | |||||||||||| ||||||||||||||||||||    
T  42644298 tatccaaacataaatcactttacattcaactcacttttaactaaaatcaatttt 42644351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 44225600 - 44225665
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||||||| ||| | ||||| |||||| ||||||| |||||||||| ||||||||||||    
T  44225600 gtatccaaacataaatcactttacattaaactcacttttaacgaaaatcaattctacaaaatcaat 44225665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 41115355 - 41115291
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||||||||  | |||||||||||||| ||| | |||||||||| ||||||||||||    
T  41115355 tatccaaacataaaccattttacattcaactcattgttagccaaaatcaattatacaaaatcaat 41115291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 39981119 - 39981171
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||||||| || |||| |||||| ||||||||||||||||||    
T  39981119 tgtatccaaacataaaccacttc-catttaactcacttttaactaaaatcaatt 39981171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 50664792 - 50664845
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  50664792 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 50664845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 52925617 - 52925552
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||||||||||| | || ||||||||| |||||   | |||||||||||||||||||||    
T  52925617 gtatccaaacataaaccactttactttcaactcaattttagtgagaatcaattttacaaaatcaat 52925552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 7012675 - 7012727
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    ||||||||||||||| ||| | |||||||||||| ||||||| ||||||||||    
T  7012675 gtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 7012727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 23496352 - 23496404
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    ||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  23496352 gtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 23496404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 34561142 - 34561198
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttta 218  Q
    |||||||||||||||| ||  || ||||||||||| ||||||| |||||||||||||    
T  34561142 tgtatccaaacataaatcaattcgcattcaactcacttttaaccaaaatcaatttta 34561198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 21023281 - 21023222
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaa 222  Q
    ||||| ||||||||| ||| ||| ||||||||||  |||||| |||||||||||||||||    
T  21023281 gtatctaaacataaatcacttcaaattcaactcacatttaaccaaaatcaattttacaaa 21023222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 23207135 - 23207068
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt-ttacaaaatcaat 228  Q
    |||||||||||||||| ||  ||||||  |||||||||||||| |||||||||| | |||||||||||    
T  23207135 tgtatccaaacataaatcaattcacatcaaactcatttttaaccaaaatcaattataacaaaatcaat 23207068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 31084241 - 31084308
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt-ttacaaaatcaat 228  Q
    |||||||||||||||| ||  |||||||||||||| ||||||  |||||||||| || ||||||||||    
T  31084241 tgtatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaattctttcaaaatcaat 31084308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 10852775 - 10852713
Alignment:
Q  167 ccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttta-caaaatcaat 228  Q
    ||||||||||| ||| | |||||||||||| ||||||| |||||||||| || ||||||||||    
T  10852775 ccaaacataaatcactttacattcaactcacttttaaccaaaatcaattataccaaaatcaat 10852713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 26736353 - 26736395
Alignment:
Q  185 acattcaactcatttttaactaaaatcaattttacaaaatcaa 227  Q
    ||||||||  ||||||| |||||||||||||||||||||||||    
T  26736353 acattcaatccatttttgactaaaatcaattttacaaaatcaa 26736395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 31766242 - 31766176
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||||||| ||| | |  ||||||||| ||||| | ||||| |||||||||||||||||    
T  31766242 tgtatccaaacataaatcactttaacttcaactcacttttatccaaaattaattttacaaaatcaat 31766176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 38626750 - 38626812
Alignment:
Q  166 tccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||| ||  |||||||||||||| ||||||||||| || | |||||| |||||||    
T  38626750 tccaaacataaatcatttcacattcaactcacttttaactaaagtcgactttacataatcaat 38626812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 48089685 - 48089619
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||| |||||| ||  | |||||||||||| ||||||||| ||||||||||| | |||||||    
T  48089685 tgtatccaatcataaatcattttacattcaactcacttttaactagaatcaattttaaagaatcaat 48089619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 52931639 - 52931577
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaat 224  Q
    |||||||||||||||| ||  | ||| | |||||| |||||||||||||||||||| ||||||    
T  52931639 tgtatccaaacataaatcaatttacactaaactcacttttaactaaaatcaattttgcaaaat 52931577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 49634056 - 49634015
Alignment:
Q  187 attcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||| |||||||| |||| |||||||||||||||||    
T  49634056 attcaactcacttttaacttaaattaattttacaaaatcaat 49634015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 584762 - 584722
Alignment:
Q  188 ttcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||| | ||||| |||||||||||||||||||||||||    
T  584762 ttcaacttaattttagctaaaatcaattttacaaaatcaat 584722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 41115059 - 41114991
Alignment:
Q  147 tcactttaatgcgactgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    ||||||| |||| | |||||||||||||||||||| | ||||||||| || |  ||| |||||||||||    
T  41115059 tcacttttatgcaaatgtatccaaacataaaccacttaacattcaacacactgctaagtaaaatcaatt 41114991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 50427188 - 50427228
Alignment:
Q  188 ttcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||||||| ||| ||||||||||||||| |||||    
T  50427188 ttcaactcatttttagctagaatcaattttacaaattcaat 50427228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 53078418 - 53078454
Alignment:
Q  188 ttcaactcatttttaactaaaatcaattttacaaaat 224  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  53078418 ttcaactcatttctaactaaaatcaattctacaaaat 53078454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 55154556 - 55154588
Alignment:
Q  183 tcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||| ||||||||||||||||||    
T  55154556 tcacattcaactcacttttaactaaaatcaatt 55154588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 65536 - 65600
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||||| ||| | ||||| |||||||||||||| ||||||||||| ||| |||||||    
T  65536 tatccaaacataaatcactttacattaaactcatttttaaccaaaatcaatttcacagaatcaat 65600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 29923294 - 29923396
Alignment:
Q  124 tacactcaaatttactattttactcactttaatgcgactgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaa 223  Q
    |||||||||||||| | ||| ||||||||||  |||| |||||  ||||||||||||| |||||||||| ||| |||||||| |||| ||  ||||||||    
T  29923294 tacactcaaatttaatgtttaactcactttac-gcgaatgtatgtaaacataaaccacttcacattcaattcacttttaactgaaat-aaagttacaaaa 29923391  T
Q  224 tcaat 228  Q
    |||||    
T  29923392 tcaat 29923396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 2483776 - 2483725
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||| ||  |||||||||||||| ||||||||||||||||||    
T  2483776 tatccaaacataaatcaattcacattcaactcacttttaactaaaatcaatt 2483725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 2868414 - 2868355
Alignment:
Q  165 atccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaat 224  Q
    |||||||| |||| ||| | |||||||||||| |||||||||||||||||| ||||||||    
T  2868414 atccaaacttaaatcactttacattcaactcacttttaactaaaatcaattctacaaaat 2868355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 9861131 - 9861185
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattt 216  Q
    |||||||| ||||||||||| |||||| ||||| | |||||||||||||||||||    
T  9861131 tgtatccagacataaaccacttcacatccaactaaattttaactaaaatcaattt 9861185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 19784864 - 19784914
Alignment:
Q  165 atccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    ||||||||||||||||| | |||||||||||| ||||||| ||||||||||    
T  19784864 atccaaacataaaccactttacattcaactcacttttaaccaaaatcaatt 19784914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 621357 - 621292
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||| |||||| ||| | | |||||||| | ||||||| |||||||||||||||||||||||    
T  621357 gtatccaatcataaatcactttaaattcaactgaattttaaccaaaatcaattttacaaaatcaat 621292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 1102128 - 1102169
Alignment:
Q  78 tagaattgattttaacttgaaactaagatttgtagcttttga 119  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  1102128 tagaattgattttaacttgaagctaggatttgtagcttttga 1102169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 22482237 - 22482290
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||||| ||||||| ||||||||||    
T  22482237 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 22482290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 22811075 - 22811127
Alignment:
Q  163 gtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    ||||||||||||||| ||| | |||||||||||| ||||||| ||||||||||    
T  22811075 gtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 22811127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 38045315 - 38045371
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttta 218  Q
    |||||| ||||||| ||||| | ||||| |||||| |||||||||||||||||||||    
T  38045315 tgtatctaaacatacaccactttacatttaactcacttttaactaaaatcaatttta 38045371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 42439314 - 42439250
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||||||||| |||  |||| |||||||| || ||| |||||||||||| |||||||||||    
T  42439314 tatccaaacataaatcactccacaatcaactcacttctaagtaaaatcaatttcacaaaatcaat 42439250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 3748951 - 3749010
Alignment:
Q  167 ccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatca 226  Q
    ||||||||||||||| | ||||| |||||| ||||||||| ||||||||||  |||||||    
T  3748951 ccaaacataaaccactttacattaaactcacttttaactataatcaattttgtaaaatca 3749010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 5465441 - 5465399
Alignment:
Q  186 cattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||    
T  5465441 cattcaattcacttttatctaaaatcaattttacaaaatcaat 5465399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 27021181 - 27021231
Alignment:
Q  167 ccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttt 217  Q
    ||||||||||| ||  ||||||| |||||||||||||| ||||||||||||    
T  27021181 ccaaacataaatcaattcacatttaactcatttttaaccaaaatcaatttt 27021231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 29922990 - 29923056
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    ||||||||||||||||  || |||||||||||||| || ||   ||||||||||||||| |||||||    
T  29922990 tgtatccaaacataaattacttcacattcaactcacttatagtcaaaatcaattttacataatcaat 29923056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 4292197 - 4292250
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatt 215  Q
    |||||||||||||||| ||  |||||||||||| ||||||||  ||||||||||    
T  4292197 tgtatccaaacataaatcaattcacattcaacttatttttaatcaaaatcaatt 4292250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 6988235 - 6988276
Alignment:
Q  187 attcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||| | |||||| ||||||||||||||||||||||||    
T  6988235 attcaacttacttttaattaaaatcaattttacaaaatcaat 6988276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 28304865 - 28304812
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaatttt 217  Q
    |||||||| ||||| ||  || ||||||||||||||||||||||||| ||||||    
T  28304865 tatccaaatataaatcatttcccattcaactcatttttaactaaaataaatttt 28304812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 40907622 - 40907573
Alignment:
Q  172 cataaaccacatcacattcaactcatttttaactaaaatcaattttacaa 221  Q
    |||||| ||||| |||||| |||| |||||| ||||||||||||||||||    
T  40907622 cataaatcacattacattcgactcgtttttatctaaaatcaattttacaa 40907573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 10372988 - 10373028
Alignment:
Q  162 tgtatccaaacataaaccacatcacattcaactcattttta 202  Q
    |||||||||||||||||||  | ||||||||||||||||||    
T  10372988 tgtatccaaacataaaccagtttacattcaactcattttta 10373028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 13340 - 13276
Alignment:
Q  164 tatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaatcaat 228  Q
    |||||||| |||| |||  | |||||||||||| |||||| || |||||||||||||||||||||    
T  13340 tatccaaatataagccattttacattcaactcaattttaaatataatcaattttacaaaatcaat 13276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 14147 - 14044
Alignment:
Q  124 tacactcaaatttactattttactcactttaatgcgactgtatccaaacataaaccacatcacattcaactcatttttaactaaaatcaattttacaaaa 223  Q
    |||||||||||||| | ||  ||||||||| |   || |||||||||||||||| ||| | || ||||||||| || || | | ||||||||||||||||    
T  14147 tacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactcaattgtagcaagaatcaattttacaaaa 14048  T
Q  224 tcaa 227  Q
    ||||    
T  14047 tcaa 14044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University