View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10301_low_9 (Length: 299)
Name: NF10301_low_9
Description: NF10301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 70 - 285
Target Start/End: Complemental strand, 33861368 - 33861152
Alignment:
| Q |
70 |
tcttttggaaccaaacaaacaataaatagagaatataaaaccacatt-tggagtacgataaagttgttcaaatatcattactcatctnnnnnnntatgac |
168 |
Q |
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| T |
33861368 |
tcttttggaaccaaccaaacaataaatagagaatataaaaccacaatctggagtacgataaagttgttcaaatatcattactcatctaagaaaatatgac |
33861269 |
T |
|
| Q |
169 |
tccaccaccactatgtgtctatgaagtaatttccgctaaaatttgttaaactcggcataagtatagaagcttgatttctcgaattctatttgttaaaacc |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861268 |
tccaccaccactatgtgtctatgaagtaatttccgctaaaatttgttaaactcggcataagtatagaagcttgatttctcgaattctatttgttaaaacc |
33861169 |
T |
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| Q |
269 |
tatcttcctttgggttc |
285 |
Q |
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||||||||||||||||| |
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| T |
33861168 |
tatcttcctttgggttc |
33861152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33861402 - 33861344
Alignment:
| Q |
1 |
ccaagatatatttagacaacattctttttccttttcttttggaaccaaccaaacaataa |
59 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861402 |
ccaagatatatttagacaacattctttttccttttcttttggaaccaaccaaacaataa |
33861344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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