View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10302_high_10 (Length: 220)
Name: NF10302_high_10
Description: NF10302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10302_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 44317351 - 44317159
Alignment:
| Q |
14 |
agacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtctgttctcgatgatgcaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44317351 |
agacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtctgttctcgatgatgcaa |
44317252 |
T |
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| Q |
114 |
ttcgtagggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaaatgaggggttagaactatttatggagggtgtaattg |
206 |
Q |
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| T |
44317251 |
ttcgtagggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaaatgaggggttagaactatttatggagggtgtaattg |
44317159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 43896710 - 43896515
Alignment:
| Q |
19 |
cgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtctgttctcgatgatgcaattcgt |
118 |
Q |
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| T |
43896710 |
cgaactcattgaaatcgtctcagaggttgatgataaactttctgaagcttttcacggtggcagccaaatttcagaatctgttctcgatgatgcaattcgt |
43896611 |
T |
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| Q |
119 |
agggcaactatatcaatgaaatttgtaccaattatc------ttta---gtgatgagagaaatgaggggttagaactatttatggagggtgtaatt |
205 |
Q |
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| T |
43896610 |
agggcaactatatcaatgaaatttgtaccaattttcatgggtgttatctgtgatgagagacatgatgggttagaactacttatggagggtgtaatt |
43896515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 44302067 - 44301930
Alignment:
| Q |
14 |
agacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtctgttctcgatgatgcaa |
113 |
Q |
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|||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44302067 |
agacgcgaactcattgaaattgtatcggaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtcttatctcgatgatgcaa |
44301968 |
T |
|
| Q |
114 |
ttcgtagggcaactatatcaatgaaatttgtaccaatt |
151 |
Q |
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||||| ||||||| ||| ||| |||||||||||||||| |
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| T |
44301967 |
ttcgtggggcaaccatagcaaggaaatttgtaccaatt |
44301930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 44307163 - 44306969
Alignment:
| Q |
20 |
gaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtctgttctcgatgatgcaattcgta |
119 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
44307163 |
gaactcattgaaattgtatcagaggttgatgataaactttctgaagattttcatggtggcagccaaatttcagagtctgttctcgatgatgcaattcgta |
44307064 |
T |
|
| Q |
120 |
gggcaactatatcaatgaaatttgtaccaattatc---------tttagtgatgagagaaatgaggggttagaactatttatggagggtgtaatt |
205 |
Q |
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||||||| ||| || |||||||||||||||| || || ||||| |||||| | ||||||||||||||| ||| ||||||||||||| |
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| T |
44307063 |
gggcaaccatagcacggaaatttgtaccaattttcatgggtactttcagtgacgagagatacgaggggttagaactacttagggagggtgtaatt |
44306969 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 18702314 - 18702123
Alignment:
| Q |
14 |
agacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtctgttctcgatgatgcaa |
113 |
Q |
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|||| |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||| |
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| T |
18702314 |
agacgcgaactcattgaaattgtgtcagaggttgatgataaactttctaaagcttttcatggtggcagcaaaattccagagtctgttctcgatgatgcaa |
18702215 |
T |
|
| Q |
114 |
ttcgtagggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaaatgaggggttagaactatttatggagggtgtaatt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| |||| ||||||| ||||||||||||||| |
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| T |
18702214 |
ttcgtagggcaactatatcaatgaaatttgtaccaattatcattggtgatgagagctatgagacgttaaaactattaatggagggtgtaatt |
18702123 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 4084824 - 4084633
Alignment:
| Q |
14 |
agacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtctgttctcgatgatgcaa |
113 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||||||| ||||||| |||||||| ||||| |
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| T |
4084824 |
agacgcgaactcattgaaattgtatcagaggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagagtcttatctcgatggtgcaa |
4084725 |
T |
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| Q |
114 |
ttcgtagggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaaatgaggggttagaactatttatggagggtgtaatt |
205 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
4084724 |
ttcgtagggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggttaaaactatttatggagggtgtaatt |
4084633 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 8158650 - 8158841
Alignment:
| Q |
14 |
agacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtctgttctcgatgatgcaa |
113 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||||||| ||||||| ||| |||||||||| |
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| T |
8158650 |
agacacgaactcattgaaattgtatcagagattgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtcttatctggatgatgcaa |
8158749 |
T |
|
| Q |
114 |
ttcgtagggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaaatgaggggttagaactatttatggagggtgtaatt |
205 |
Q |
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|||| |||||||||||| ||| ||||||||||||||||||| | |||||||||||| |||||||| ||||| |||||||||||||||||||| |
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| T |
8158750 |
ttcggagggcaactatagcaaggaaatttgtaccaattatcataagtgatgagagatatgaggggatagaagtatttatggagggtgtaatt |
8158841 |
T |
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