View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10302_high_2 (Length: 443)
Name: NF10302_high_2
Description: NF10302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10302_high_2 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 63280 - 63668
Alignment:
| Q |
1 |
agacagagtcctagtgggatgacacgtgtaataaccccattgaataatggaatatgatcagggagggttaccaccgtagcacaaggcattaataga---- |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63280 |
agacagagtcctagtgggatgacacgtgtaataaccccattgaataaaggaatatgatcagggagggttaccaccgtagcacaaggcattaatagatcta |
63379 |
T |
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| Q |
97 |
---gctatgttatg----------gggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgtt |
183 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63380 |
tcagctatgttatggtatggtatggggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgtt |
63479 |
T |
|
| Q |
184 |
ctttttctatcctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttat |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63480 |
ctttttctatcctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttat |
63579 |
T |
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| Q |
284 |
ctttgtctaaacatttttcagaaaaaggaaaac-aagaatacactcaccctagggatttgtgactgatcacaatattgctatgctacct |
371 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
63580 |
ctttgtctaaacatttttcagaaaaaggaaaacaaagaatacactccccctagggatttgtgactgatcacaatatggctatgctacct |
63668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 40909814 - 40909426
Alignment:
| Q |
1 |
agacagagtcctagtgggatgacacgtgtaataaccccattgaataatggaatatgatcagggagggttaccaccgtagcacaaggcattaataga---- |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909814 |
agacagagtcctagtgggatgacacgtgtaataaccccattgaataaaggaatatgatcagggagggttaccaccgtagcacaaggcattaatagatcta |
40909715 |
T |
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| Q |
97 |
---gctatgttatgg----------ggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgtt |
183 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909714 |
tcagctatgttatggtatggtatggggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgtt |
40909615 |
T |
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| Q |
184 |
ctttttctatcctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttat |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909614 |
ctttttctatcctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttat |
40909515 |
T |
|
| Q |
284 |
ctttgtctaaacatttttcagaaaaaggaaaac-aagaatacactcaccctagggatttgtgactgatcacaatattgctatgctacct |
371 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40909514 |
ctttgtctaaacatttttcagaaaaaggaaaacaaagaatacactccccctagggatttgtgactgatcacaatatggctatgctacct |
40909426 |
T |
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