View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10302_high_3 (Length: 392)
Name: NF10302_high_3
Description: NF10302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10302_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 26653242 - 26652958
Alignment:
| Q |
16 |
gatagatgaatgtataattgagataaaaggaatttaaagttgatcaaggaaagatgaactaactaatgaagcctattcccaacataacttgtctattgtt |
115 |
Q |
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| T |
26653242 |
gataggtgaaggtataattggaataaaaggaatttaaagttgatcaaggaaagatgaactaactaatgaagtctattcccaacataacttgtctattgtt |
26653143 |
T |
|
| Q |
116 |
tgtttcatccttcactcataatttctcaatgaacacctataatcagctaaacactaccaactaataattataaatctttgattcttcattgctacaatcg |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26653142 |
tgtttcatccttcactcataatttctcaataaacacctataatcagctaaacactaccaactaataattataaatctttgattcttcattgctacaatcg |
26653043 |
T |
|
| Q |
216 |
ggctcatcaaatggcgccgttcccatggatttgtgttaattgattgtaaggtaattttttgttgttaaaagtttgtatattaattaga |
303 |
Q |
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| T |
26653042 |
ggctcatcaaatggcgctgttcccatggatttgtgttaattgattgtaaggtaa---tttgttgataaaagtttgtatattaattaga |
26652958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 70 - 178
Target Start/End: Original strand, 31930773 - 31930881
Alignment:
| Q |
70 |
tgaactaactaatgaagcctattcccaacataacttgtctattgtttgtttcatccttcactcataatttctcaatgaacacctataatcagctaaacac |
169 |
Q |
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|||||| |||| |||||| || |||||||| ||||| |||||||||||||||| || ||||||||||| | ||||| |||||||| ||||| |||||||| |
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| T |
31930773 |
tgaactgactagtgaagcttaatcccaacacaacttttctattgtttgtttcacccctcactcataatgtgtcaataaacacctacaatcaactaaacac |
31930872 |
T |
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| Q |
170 |
taccaacta |
178 |
Q |
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||||||||| |
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| T |
31930873 |
taccaacta |
31930881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 18435572 - 18435520
Alignment:
| Q |
70 |
tgaactaactaatgaagcctattcccaacataacttgtctattgtttgtttca |
122 |
Q |
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| T |
18435572 |
tgaactaactaatgaagcttaatcccaacacaacttgtctgttgtttatttca |
18435520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 26744507 - 26744607
Alignment:
| Q |
72 |
aactaactaatgaagcctattcccaacataacttgtctattgtttgtttcatccttcactcataatttctcaatgaacacctataatcagctaaacacta |
171 |
Q |
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|||||||||||||||| || ||| |||| || |||| ||||||||||||| || |||||||| | | ||||| |||||||| ||||| | |||||||| |
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| T |
26744507 |
aactaactaatgaagcttaatcctaacacaaattgtaaattgtttgtttcaccc--cactcatattatatcaataaacacctacaatcaaccaaacacta |
26744604 |
T |
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| Q |
172 |
cca |
174 |
Q |
| |
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||| |
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|
| T |
26744605 |
cca |
26744607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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