View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10302_high_7 (Length: 244)
Name: NF10302_high_7
Description: NF10302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10302_high_7 |
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| [»] scaffold1108 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 13098416 - 13098646
Alignment:
| Q |
9 |
atgaatatattaattggtgcgtattttatttattaggnnnnnnnnnntcattatgatgtttcatgtgtgtagcatgcagttccattaatgcagcagttgg |
108 |
Q |
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| T |
13098416 |
atgaatatattaattggtgcgtattttatttattag-aaaaaaaaaatcattatgatgtttcatgtgtgtagcatgcagttccattaatgcagcagttgg |
13098514 |
T |
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| Q |
109 |
aactttataaggattgtcaaaaggaattggttaaaatagcagggaaaacaaatgcaacttcaattatatctggtgcagcatatattcttgttgctggggc |
208 |
Q |
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| T |
13098515 |
aactttataaggattgtcaaaaggaattggttaaaatagcagggaaaacaaatgcaacttcaattatatctggtgcagcatatattcttgttgctggggc |
13098614 |
T |
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| Q |
209 |
tggtgattttgcagaaaattactacatatatc |
240 |
Q |
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| T |
13098615 |
tggtgattttgcagaaaattactacatatatc |
13098646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 241
Target Start/End: Original strand, 20593285 - 20593461
Alignment:
| Q |
65 |
tgtttcatgtgtgtagcatgcagttccattaatgcagcagttggaactttataaggattgtcaaaaggaattggttaaaatagcagggaaaacaaatgca |
164 |
Q |
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| T |
20593285 |
tgtttcatgtgtgtagcatgtaatcccattaatgaatcaactggagttctacaaggattgccaggaagaattggtaaaactagtagggaaagaaaatgca |
20593384 |
T |
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| Q |
165 |
acttcaattatatctggtgcagcatatattcttgttgctggggctggtgattttgcagaaaattactacatatatcc |
241 |
Q |
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| T |
20593385 |
acatcaattatttctggtgcagcatatcttcttgttgatgggtctggtgattttgcacaaaactacttcataaatcc |
20593461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 20547715 - 20547778
Alignment:
| Q |
158 |
aaatgcaacttcaattatatctggtgcagcatatattcttgttgctggggctggtgattttgca |
221 |
Q |
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| T |
20547715 |
aaatgcaacatcaattatttctaatgcagcatatcttcttgttgctgggtctggtaattttgca |
20547778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1108 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold1108
Description:
Target: scaffold1108; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 10 - 166
Alignment:
| Q |
65 |
tgtttcatgtgtgtagcatgcagttccattaatgcagcagttggaactttataaggattgtcaaaaggaattggttaaaatagcagggaaaacaaatgca |
164 |
Q |
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| T |
10 |
tgtttcatgtgtgtagcatgtaatcccattaatgaatcaactggagttctacaaggattgccaagaggaattggtaaaattaatagggaaagaaaatgca |
109 |
T |
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| Q |
165 |
acttcaattatatctggtgcagcatatattcttgttgctggggctggtgattttgca |
221 |
Q |
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| T |
110 |
acatcaattatttctggtgcagcatatcttcttgttgatgggtctggtgattttgca |
166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 17837033 - 17837197
Alignment:
| Q |
65 |
tgtttcatgtgtgtagcatgcagttccattaatgcagcagttggaactttataaggattgtcaaaaggaattggttaaaatagcagggaaaacaaatgca |
164 |
Q |
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| T |
17837033 |
tgtttcatgtgtgtagaatgtaattccattaatgaatcaactggaacactacaaggactgtcaagaataattggtggcaatagttggaaaatcaaatgca |
17837132 |
T |
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| Q |
165 |
acttcaattatatctggtgcagcatatattcttgttgctggggctggtgattttgcagaaaatta |
229 |
Q |
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| T |
17837133 |
acatcaattatttatgatgcagcatatcttcttgttgctgggtctggtgattttgcacaaaatta |
17837197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 17799512 - 17799625
Alignment:
| Q |
117 |
aaggattgtcaaaaggaattggttaaaatagcagggaaaacaaatgcaacttcaattatatctggtgcagcatatattcttgttgctggggctggtgatt |
216 |
Q |
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| T |
17799512 |
aaggattgccaagaggaattggtgaaaatagtagggaaatctaacgcaacattaaatatatatggtgtagcatatcatcttgttgttggatctggtgatt |
17799611 |
T |
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| Q |
217 |
ttgcagaaaattac |
230 |
Q |
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| T |
17799612 |
ttgcacaaaattac |
17799625 |
T |
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