View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10302_high_8 (Length: 230)
Name: NF10302_high_8
Description: NF10302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10302_high_8 |
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| [»] scaffold1108 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 13098917 - 13098698
Alignment:
| Q |
7 |
aatcaaacatttattattcacggtttataacattgatattatcttctctccaaatttatatataccttagagaagagctatatagttagaccgagtcata |
106 |
Q |
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| T |
13098917 |
aatcaaacaattattattcacgatttataacattgatattatcttctctccaaatttatatataccttagagaagagctatatagttagaccgagtcata |
13098818 |
T |
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| Q |
107 |
tatacctttagaggagagctatatagttaaaccaagagatattttgattcttgcctcccaaaaattaggtttaaaataatccctcccttatccgctccat |
206 |
Q |
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| T |
13098817 |
tatacctttagaggatagctatatagttaaaccaagagatattttaattcttgcctcccaaaaattaggtttaaaataatccctcccttatccgctccat |
13098718 |
T |
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| Q |
207 |
tcctttctaaccaatcataa |
226 |
Q |
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| T |
13098717 |
tcttttctaaccaatcataa |
13098698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 20548080 - 20548024
Alignment:
| Q |
17 |
ttattattcacggtttataacattgatattatcttctctccaaatttatatatacct |
73 |
Q |
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| T |
20548080 |
ttattatccacgattaataacatggatgttatcttctcttcaaattcatatatacct |
20548024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 20593743 - 20593687
Alignment:
| Q |
17 |
ttattattcacggtttataacattgatattatcttctctccaaatttatatatacct |
73 |
Q |
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| T |
20593743 |
ttattatccacgattaataacatgaatgttatcttctctccaaattcatatatacct |
20593687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 26062176 - 26062232
Alignment:
| Q |
18 |
tattattcacggtttataacattgatattatcttctctccaaatttatatatacctt |
74 |
Q |
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| T |
26062176 |
tattatccacgattaataacatggatattatcttctccccaaattcatatatacctt |
26062232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1108 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1108
Description:
Target: scaffold1108; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 452 - 412
Alignment:
| Q |
33 |
ataacattgatattatcttctctccaaatttatatatacct |
73 |
Q |
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| T |
452 |
ataacatggatgttatcttctctccaaattcatatatacct |
412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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