View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10302_low_1 (Length: 523)
Name: NF10302_low_1
Description: NF10302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10302_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 231 - 506
Target Start/End: Complemental strand, 14260038 - 14259758
Alignment:
| Q |
231 |
ttgaataacatcttggtatgattaccgtgattctgaaaagtgggt-tccctggatttaattaaatacattagctatgagttttaaccttttttagtgaaa |
329 |
Q |
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||||||||||||||||||| | |||||||||||||| || ||| |||||| ||||||||||||||||||| ||||||| ||||||||| ||||| ||| |
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| T |
14260038 |
ttgaataacatcttggtataagcaccgtgattctgaacggtaggtatccctgaatttaattaaatacattagatatgagtcttaacctttgttagtaaaa |
14259939 |
T |
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| Q |
330 |
ttgtgaaatttgttaattacat----ttccattacttgatctttccaagaaaaaccaccacacatgcattggtagaagatccagatagtataaaatcgat |
425 |
Q |
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| T |
14259938 |
ttgtgaaatctgttaattacttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgtt |
14259839 |
T |
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| Q |
426 |
caagtcatccacaaaatgaccatggagaatacacttgaatcgataactaaaatataccaaaaacattttcatgtcactatt |
506 |
Q |
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| T |
14259838 |
caagtcatccacaaaatgatcatggagaatacatttgaatcgataactaaaatataccaaaaacattttcatatcactatt |
14259758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 343 - 495
Target Start/End: Complemental strand, 14265447 - 14265298
Alignment:
| Q |
343 |
taattacatttccattacttgatctttccaagaaaaaccaccacacatgcattggtagaagatccagatagtataaaatcgatcaagtcatccacaaaat |
442 |
Q |
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| T |
14265447 |
taattacatttccataactcgatctttccaagaaaaaccaccacacgtgaattgtcaaaagatcca--tagtataaaatcggtcaagtcatctacaaaat |
14265350 |
T |
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| Q |
443 |
gaccatggagaatacacttgaatcgataactaaaatataccaaaaacattttc |
495 |
Q |
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| T |
14265349 |
ggtcatgaagaatacacttgaatcgataact-aaatataccataaacattttc |
14265298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 231 - 506
Target Start/End: Original strand, 22145934 - 22146211
Alignment:
| Q |
231 |
ttgaataacatcttggtatgattaccgtgattctgaaaagtgggt-tccctggatttaattaaatacattagctatgagttttaacctttttt--agtga |
327 |
Q |
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||||||||||||||||||| |||| |||||| ||||| ||| ||| | |||||||||| |||||| ||||||| |||||||||| |||||| | | |
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| T |
22145934 |
ttgaataacatcttggtataattatcgtgatcctgaatagtaggtatgcctggatttacctaaatatattagctttgagttttaattttttttttaccgg |
22146033 |
T |
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| Q |
328 |
aattgtgaaatttgttaattacatttccattacttgatctttccaagaaaaaccaccacacatgcattggtagaagatccagatagtataaaatcgatca |
427 |
Q |
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| T |
22146034 |
atttgtgaaatttgttaattaccttaccataatttgatctttccaaggaaaactaccacacatgcattgtcagaagatcctgatagtataaaatcggtga |
22146133 |
T |
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| Q |
428 |
agtcatccacaaaatgaccatggagaatacacttgaatcgataactaaaatataccaaaaacattttcatgtcactatt |
506 |
Q |
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| T |
22146134 |
agtcatccacaaaacggccatggagaatacacttgaatcggtatct-aaatataccataatcattttcgtgttactatt |
22146211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 28536975 - 28537037
Alignment:
| Q |
5 |
gaggagcagagacataaatgcttccgtaaacatattgcatttgtattttccataacttcatct |
67 |
Q |
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| T |
28536975 |
gaggatcaaagacataaatgcttccttgaacatattgcatttgtattttccataacttcatct |
28537037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 35686880 - 35686936
Alignment:
| Q |
5 |
gaggagcagagacataaatgcttccgtaaacatattgcatttgtattttccataact |
61 |
Q |
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| T |
35686880 |
gaggatcaaagacataaatgcttccttaaacgtattgcatttgtattttccataact |
35686936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 7723083 - 7723136
Alignment:
| Q |
14 |
agacataaatgcttccgtaaacatattgcatttgtattttccataacttcatct |
67 |
Q |
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| T |
7723083 |
agacataaatgtttccttaaacatattgcattcatattttccatcacttcatct |
7723136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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