View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10302_low_10 (Length: 238)
Name: NF10302_low_10
Description: NF10302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10302_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 16727932 - 16727831
Alignment:
| Q |
122 |
ttgaacatttatattagtatatgtttgaattttcctgttggtgaattatgtttaaggtgtcaactaattacatgattttttacagtaagctagtgtactt |
221 |
Q |
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| T |
16727932 |
ttgaacatttatattagtatatgtttgaattttcctattggtgaattatgtttaaggtgtcaactaattagatgattttttacagtaagctagtgtactt |
16727833 |
T |
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| Q |
222 |
tt |
223 |
Q |
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|| |
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| T |
16727832 |
tt |
16727831 |
T |
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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 17008994 - 17008885
Alignment:
| Q |
122 |
ttgaacatttatattagtatatgtttgaattttcctgttggtgaattatgtttaaggtgtc-------aactaattacatga-ttttttacagtaagcta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||| |
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| T |
17008994 |
ttgaacatttatattagtatatgtttgaattttcctattggtgaattatgtttaaggtgtcaactgtcaactaattagatgatttttttatagtaagcta |
17008895 |
T |
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| Q |
214 |
gtgtactttt |
223 |
Q |
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|||||||||| |
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| T |
17008894 |
gtgtactttt |
17008885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 8964045 - 8964135
Alignment:
| Q |
122 |
ttgaacatttatattagtatatgtttgaattttcctgttggtgaattatgtttaaggtgtcaactaattacatgattttttacagtaagct |
212 |
Q |
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| T |
8964045 |
ttgaactttaatattagtatatgattgaactttcttactggtgaattctgtttaaggtattgactaattagatgattttttacagtaagct |
8964135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 49945911 - 49945866
Alignment:
| Q |
177 |
ggtgtcaactaattacatgattttttacagtaagctagtgtactttt |
223 |
Q |
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| T |
49945911 |
ggtgtcaacta-ttagatgatttttaacagtaagctagtgtactttt |
49945866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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