View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10302_low_12 (Length: 227)
Name: NF10302_low_12
Description: NF10302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10302_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 38633928 - 38633709
Alignment:
| Q |
1 |
tagacacataaaggataaaagaatggcaacgtttgaggaactgcccgaagagtgcattgccattatactgtctcgtacgactccggttgacgcgggaaga |
100 |
Q |
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| T |
38633928 |
tagacacataaaggataaaagaatggcaatgtttgaggaactgccggaagagtgcattgccattatactgtctcgtacgactccggttgacgcgggaaga |
38633829 |
T |
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| Q |
101 |
ctctccctcgtttgtaagacattccattctgccgccaattttgacgatgtatggaaccgttttctcctcttttccgccccccaattcatggcatctatta |
200 |
Q |
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| T |
38633828 |
ctctccctcgtttgtaagacattccattctgccgccaattttgacgatgtatggaaccgttttctcctcttttccgtcccccaattcatggcatctatta |
38633729 |
T |
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| Q |
201 |
tttcacacaatcctttgctt |
220 |
Q |
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|||||||||||| ||||||| |
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| T |
38633728 |
tttcacacaatcttttgctt |
38633709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 38635657 - 38635499
Alignment:
| Q |
17 |
aaaagaatggcaacgtttgaggaactgcccgaagagtgcattgccattatactgtctcgtacgactccggttgacgcgggaagactctccctcgtttgta |
116 |
Q |
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| T |
38635657 |
aaaagaatgacatcgttagaggtactaccgaaagagtgcattgccatcatactgtctcgtatgactccagttaatgcaggcagactctccgtcgtttcta |
38635558 |
T |
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| Q |
117 |
agacattccattctgccgccaattttgacgatgtatggaaccgttttctcctcttttcc |
175 |
Q |
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| T |
38635557 |
agacattcagttctgccgccgattcagacgaagtctggactcgttttctcctcctttcc |
38635499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 35294822 - 35294938
Alignment:
| Q |
22 |
aatggcaacgtttgaggaactgcccgaagagtgcattgccattatactgtctcgtacgactccggttgacgcgggaagactctccctcgtttgtaagaca |
121 |
Q |
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| T |
35294822 |
aatggtaatgtttgaggaattggcagaagggtgcattgccaccatactgtctcgtacaactcccgttgacgccggaaaactctccctcgtttccaaaact |
35294921 |
T |
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| Q |
122 |
ttccattctgccgccaa |
138 |
Q |
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||||||||||| ||||| |
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| T |
35294922 |
ttccattctgctgccaa |
35294938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 35250037 - 35249934
Alignment:
| Q |
32 |
tttgaggaactgcccgaagagtgcattgccattatactgtctcgtacgactccggttgacgcgggaagactctccctcgtttgtaagacattccattctg |
131 |
Q |
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| T |
35250037 |
tttgatgaattgccggaagagtgcattgccgccatactctctcgaacgactcccgttgacgccgtcagactctccctcgtttctaagacactccgttctg |
35249938 |
T |
|
| Q |
132 |
ccgc |
135 |
Q |
| |
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|||| |
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| T |
35249937 |
ccgc |
35249934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 45527197 - 45527126
Alignment:
| Q |
65 |
atactgtctcgtacgactccggttgacgcgggaagactctccctcgtttgtaagacattccattctgccgcc |
136 |
Q |
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|||||||| ||||||||||| |||||||| || ||||||||| |||||| ||||| |||| |||||||||| |
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| T |
45527197 |
atactgtcacgtacgactcctgttgacgccggcagactctccgtcgtttcgaagactttcctttctgccgcc |
45527126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 198
Target Start/End: Complemental strand, 19267012 - 19266862
Alignment:
| Q |
48 |
aagagtgcattgccattatactgtctcgtacgactccggttgacgcgggaagactctccctcgtttgtaagacattccattctgccgccaattttgacga |
147 |
Q |
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||||||||| ||||| ||||||| || |||||||| | ||||||| | ||||||||| | |||| ||||||||||| |||| |||| ||| |||| |
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| T |
19267012 |
aagagtgcactgccaatatactgacttttacgactctgattgacgcagatagactctccattgtttctaagacattccgttctaccgctgattctgacat |
19266913 |
T |
|
| Q |
148 |
tgtatggaaccgttttctcctcttttccgccccccaattcatggcatctat |
198 |
Q |
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||| ||||| | |||||||||| |||||| | | || |||||||| ||||| |
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| T |
19266912 |
tgtctggaatcattttctcctcctttccgacactcagttcatggcctctat |
19266862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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