View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10302_low_6 (Length: 358)
Name: NF10302_low_6
Description: NF10302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10302_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 48798727 - 48799053
Alignment:
| Q |
18 |
ggttggttttgcagtagccattactgttgaaattacttcaggaaaaggactcctagaggtatatttgcacaccataacgtaaactttgagttactttatg |
117 |
Q |
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| T |
48798727 |
ggttggttttgcagtagccattactgttgaaattacttcaggaaaaggactcctagaggtatatttgcacaccataacgtaaactttgagttactttatg |
48798826 |
T |
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| Q |
118 |
catgacttagactgcaatcacttgtcttcaatcttttaagtcatgaaacaaattataatttccatcaaatgattgataattggcttatatgtttttcttt |
217 |
Q |
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| T |
48798827 |
catgacttagactgcaatcacttgtcttcaatcttttaagtcatgaaacaaattataatttccatcaaatgattgataattggcttatatgtttttcttt |
48798926 |
T |
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| Q |
218 |
ctatcacccctatttgtcaaaactcaaatgtttgctttgatattttagctgcaatatggtaatcttcctttctcctttactttatagtgtgtatggtatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48798927 |
ctatcacccctatttgtcaaaactcaaatgtttgctttgatattttagctgcaatatggtaatcttcctttctcctttactttatagtgtgtatggtatc |
48799026 |
T |
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| Q |
318 |
tagttgtaaaattaagctatgtctctg |
344 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
48799027 |
tagttgtaaaattaagctatgtgtctg |
48799053 |
T |
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