View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10303_low_1 (Length: 561)
Name: NF10303_low_1
Description: NF10303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10303_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 42239152 - 42239712
Alignment:
| Q |
1 |
tgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239152 |
tgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctgg |
42239251 |
T |
|
| Q |
101 |
gcgaaaaaggattcaattttgatgatgatcaatttcatcaaattccattatcaaaaggtccaatttcttaatatttgtgttattaacatttcttttgtta |
200 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239252 |
gcgaaaaaggattcaattttgatcacgatcaatttcatcaaattccattatcaaaaggtccaatttcttaatatttgtgttattaacatttcttttgtta |
42239351 |
T |
|
| Q |
201 |
ggtgtaaatatttgcacacatgatggcagtgcacagtggcggagccattcattggcttggatgggccgtggcccacccaaaccctnnnnnnntcatttct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42239352 |
ggtgtaaatatttgcacacatgatggcagtgcacagtggcggagccattcattggcttggatgggccgtggcccacccaaaccct-aaaaaatcatttct |
42239450 |
T |
|
| Q |
301 |
aatttgtaggaacaatcagagtttggaatgaaggaa--------gtttacaccaccttcttcatcctaccaaaactactttgttcgcactaaaacatata |
392 |
Q |
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||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239451 |
aatttgttggaacaatcagagtttggattgaaggaatctaaattgtttacaccaccttcttcatcctaccaaaactactttgttcgcactaaaacatata |
42239550 |
T |
|
| Q |
393 |
tgtaccaaacatagacagttagcatgcagtatctcattgatcatttacaacaatagttgagaaggaaaacaatttatttcacttact------taatgct |
486 |
Q |
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| T |
42239551 |
tgtaccaaacat-----gttagcatgcaatatctcattgatcatttacaacaaaagttgagaaggaaaacaatttatttcacttacttgaatataatgct |
42239645 |
T |
|
| Q |
487 |
ctattgcgtgccaattgcaccaattacttgaaaactctcttgtattgtagatgcacacaggttctgc |
553 |
Q |
| |
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| T |
42239646 |
ctattgcgcgccaattgcaccaattacttgaacactctcttgtattgtagatgcacacaggttctgc |
42239712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 17649750 - 17649959
Alignment:
| Q |
2 |
gtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctggg |
101 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |||||||||| || |||| |
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| T |
17649750 |
gtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagaaaaactca---caggagatgtgtctcataggaaaacaacaaattgtggg |
17649846 |
T |
|
| Q |
102 |
cgaaaaaggattcaattttgatgatgatcaatttcatcaaattccattatc-aaaaggtccaa---tttcttaatatttgtgttattaacatttcttttg |
197 |
Q |
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|||||||||||| || | ||| |||||||||||| |||| |||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||| |
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| T |
17649847 |
cgaaaaaggattgaa-ctggatcatgatcaatttcgtcaagttccattatcaaaaaggtccaatttttttttaatatttgtgttattaacatttattttg |
17649945 |
T |
|
| Q |
198 |
ttaggtgtaaatat |
211 |
Q |
| |
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|||||||||||||| |
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| T |
17649946 |
ttaggtgtaaatat |
17649959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 42541004 - 42540845
Alignment:
| Q |
2 |
gtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctggg |
101 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |||| |
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| T |
42541004 |
gtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagcaaaactca---caggagatgtgtctcataggaaaacaacaaattgtggg |
42540908 |
T |
|
| Q |
102 |
cgaaaaaggattcaattttgatgatgatcaatttcatcaaattccattatc-aaaaggtccaat |
164 |
Q |
| |
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|||||||||||| || | ||| |||||||||||| |||| |||||||||| |||||||||||| |
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| T |
42540907 |
cgaaaaaggattgaa-ctggatcatgatcaatttcttcaagttccattatcaaaaaggtccaat |
42540845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 1328551 - 1328710
Alignment:
| Q |
2 |
gtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctggg |
101 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |||| |
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| T |
1328551 |
gtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagcaaaactca---caggagatgtgtctcataggaaaacaacaaattgtggg |
1328647 |
T |
|
| Q |
102 |
cgaaaaaggattcaattttgatgatgatcaatttcatcaaattccattatc-aaaaggtccaat |
164 |
Q |
| |
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|||||||||||| || | ||| |||||||||||| |||| |||||||||| |||||||||||| |
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| T |
1328648 |
cgaaaaaggattgaa-ctggatcatgatcaatttcttcaagttccattatcaaaaaggtccaat |
1328710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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