View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10303_low_2 (Length: 536)

Name: NF10303_low_2
Description: NF10303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10303_low_2
NF10303_low_2
[»] chr2 (8 HSPs)
chr2 (1-280)||(42239152-42239431)
chr2 (257-536)||(42239152-42239431)
chr2 (257-303)||(36436295-36436341)
chr2 (263-300)||(2076934-2076971)
chr2 (262-303)||(6750124-6750165)
chr2 (262-303)||(28745612-28745653)
chr2 (262-303)||(38527173-38527214)
chr2 (263-303)||(1021189-1021229)
[»] chr1 (11 HSPs)
chr1 (2-211)||(17649750-17649959)
chr1 (326-535)||(17649750-17649959)
chr1 (259-303)||(29981821-29981865)
chr1 (262-304)||(8530081-8530123)
chr1 (262-303)||(6849752-6849793)
chr1 (259-304)||(9042532-9042577)
chr1 (262-303)||(16693066-16693107)
chr1 (262-303)||(17285411-17285452)
chr1 (262-303)||(47561726-47561767)
chr1 (259-303)||(919824-919868)
chr1 (259-303)||(48708532-48708576)
[»] chr7 (6 HSPs)
chr7 (373-535)||(42540845-42541004)
chr7 (2-164)||(42540845-42541004)
chr7 (259-303)||(36675602-36675646)
chr7 (262-304)||(26873701-26873743)
chr7 (262-303)||(43859090-43859131)
chr7 (262-303)||(44724181-44724222)
[»] chr3 (8 HSPs)
chr3 (2-164)||(1328551-1328710)
chr3 (373-535)||(1328551-1328710)
chr3 (262-304)||(29126162-29126204)
chr3 (262-303)||(7160409-7160450)
chr3 (262-303)||(18163717-18163758)
chr3 (262-303)||(50527752-50527793)
chr3 (262-303)||(52571543-52571584)
chr3 (259-303)||(36633486-36633530)
[»] chr8 (6 HSPs)
chr8 (259-303)||(24797169-24797213)
chr8 (262-303)||(9830607-9830648)
chr8 (262-303)||(34934374-34934415)
chr8 (262-302)||(1183823-1183863)
chr8 (262-302)||(6316877-6316917)
chr8 (263-303)||(41838074-41838114)
[»] chr5 (8 HSPs)
chr5 (259-303)||(25701535-25701579)
chr5 (262-303)||(3631258-3631299)
chr5 (262-303)||(8074357-8074398)
chr5 (262-303)||(9737824-9737865)
chr5 (262-303)||(13013372-13013413)
chr5 (259-300)||(16823133-16823174)
chr5 (262-303)||(26525347-26525388)
chr5 (262-303)||(26784911-26784952)
[»] scaffold0131 (1 HSPs)
scaffold0131 (262-304)||(11165-11207)
[»] chr4 (11 HSPs)
chr4 (262-304)||(44817667-44817709)
chr4 (262-304)||(51001474-51001516)
chr4 (262-303)||(6755828-6755869)
chr4 (262-303)||(18491186-18491227)
chr4 (262-303)||(19653762-19653803)
chr4 (258-303)||(22647110-22647155)
chr4 (262-303)||(36584423-36584464)
chr4 (262-303)||(40228549-40228590)
chr4 (259-304)||(52581454-52581498)
chr4 (263-303)||(11651085-11651125)
chr4 (258-302)||(44745704-44745748)
[»] scaffold0014 (1 HSPs)
scaffold0014 (262-303)||(64933-64974)
[»] chr6 (2 HSPs)
chr6 (264-305)||(12698491-12698532)
chr6 (259-303)||(24635585-24635629)


Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 42239152 - 42239431
Alignment:
Q  1 tgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42239152 tgtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctgg 42239251  T
Q  101 gcgaaaaaggattcaattttgatgatgatcaatttcatcaaattccattatcaaaaggtccaatttcttaatatttgtgttattaacatttcttttgtta 200  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42239252 gcgaaaaaggattcaattttgatcacgatcaatttcatcaaattccattatcaaaaggtccaatttcttaatatttgtgttattaacatttcttttgtta 42239351  T
Q  201 ggtgtaaatatttgcacacatgatggcagtgcacagtggcggagccattcattggcttggatgggccgtggcccacccaa 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42239352 ggtgtaaatatttgcacacatgatggcagtgcacagtggcggagccattcattggcttggatgggccgtggcccacccaa 42239431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 257 - 536
Target Start/End: Complemental strand, 42239431 - 42239152
Alignment:
Q  257 ttggatgggccgtggcccacccaagccaatgaatggctccgccactgtgcactgccatcatgtgtgcaaatatttacacctaacaaaagaaatgttaata 356  Q
    |||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42239431 ttgggtgggccacggcccatccaagccaatgaatggctccgccactgtgcactgccatcatgtgtgcaaatatttacacctaacaaaagaaatgttaata 42239332  T
Q  357 acacaaatattaagaaattggaccttttgataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgt 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  42239331 acacaaatattaagaaattggaccttttgataatggaatttgatgaaattgatcgtgatcaaaattgaatcctttttcgcccagaaattgttgtttttgt 42239232  T
Q  457 atgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgaca 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42239231 atgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgaca 42239152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 36436295 - 36436341
Alignment:
Q  257 ttggatgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    |||| ||||||||||||||||| |||| ||||| |||||||||||||    
T  36436295 ttgggtgggccgtggcccaccccagcccatgaagggctccgccactg 36436341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 2076971 - 2076934
Alignment:
Q  263 gggccgtggcccacccaagccaatgaatggctccgcca 300  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  2076971 gggccgtggcccaccctagccaatgaagggctccgcca 2076934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 6750124 - 6750165
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  6750124 tgggccgtggcccaccccagcccatgaagggctccgccactg 6750165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 28745612 - 28745653
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  28745612 tgggccgtggcccaccccagcccatgaagggctccgccactg 28745653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 38527214 - 38527173
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  38527214 tgggccgtggcccaccccagcccatgaagggctccgccactg 38527173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 1021189 - 1021229
Alignment:
Q  263 gggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    |||||||||||||||| |||| ||||| |||||||||||||    
T  1021189 gggccgtggcccaccccagcccatgaagggctccgccactg 1021229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 17649750 - 17649959
Alignment:
Q  2 gtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctggg 101  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||   ||||||||||||||||||  |||||||||| || ||||    
T  17649750 gtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagaaaaactca---caggagatgtgtctcataggaaaacaacaaattgtggg 17649846  T
Q  102 cgaaaaaggattcaattttgatgatgatcaatttcatcaaattccattatc-aaaaggtccaa---tttcttaatatttgtgttattaacatttcttttg 197  Q
    |||||||||||| ||  | ||| |||||||||||| |||| |||||||||| |||||||||||   ||| |||||||||||||||||||||||| |||||    
T  17649847 cgaaaaaggattgaa-ctggatcatgatcaatttcgtcaagttccattatcaaaaaggtccaatttttttttaatatttgtgttattaacatttattttg 17649945  T
Q  198 ttaggtgtaaatat 211  Q
    ||||||||||||||    
T  17649946 ttaggtgtaaatat 17649959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 326 - 535
Target Start/End: Complemental strand, 17649959 - 17649750
Alignment:
Q  326 atatttacacctaacaaaagaaatgttaataacacaaatattaagaaa---ttggacctttt-gataatggaatttgatgaaattgatcatcatcaaaat 421  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||   ||||||||||| |||||||||| |||| |||||||||||| ||| |  |    
T  17649959 atatttacacctaacaaaataaatgttaataacacaaatattaaaaaaaaattggacctttttgataatggaacttgacgaaattgatcatgatccag-t 17649861  T
Q  422 tgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagaga 521  Q
    | |||||||||||||||| || ||||||||||  ||||||||||||||||||   |||||||| |||||||||||||| |||||||||||||||||||||    
T  17649860 tcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcctg---tgagtttttctctcttccaaatacgtttaatgacactaacagaga 17649764  T
Q  522 ccgaatacattgac 535  Q
    | ||||||||||||    
T  17649763 ctgaatacattgac 17649750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 29981821 - 29981865
Alignment:
Q  259 ggatgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||    
T  29981821 ggatgggccgtggcccaccccagcccatgaagggctccgccactg 29981865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 8530123 - 8530081
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactgt 304  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||    
T  8530123 tgggccgtggcccaccccagcccatgaagggctccgccactgt 8530081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 6849793 - 6849752
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  6849793 tgggccgtggcccaccccagcccatgaagggctccgccactg 6849752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 9042532 - 9042577
Alignment:
Q  259 ggatgggccgtggcccacccaagccaatgaatggctccgccactgt 304  Q
    ||||||||||||||||| || |||| ||||| ||||||||||||||    
T  9042532 ggatgggccgtggcccagcccagcccatgaagggctccgccactgt 9042577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 16693066 - 16693107
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  16693066 tgggccgtggcccaccccagcccatgaagggctccgccactg 16693107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 17285411 - 17285452
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  17285411 tgggccgtggcccaccccagcccatgaagggctccgccactg 17285452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 47561767 - 47561726
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||||| || ||||| |||||||||||||    
T  47561767 tgggccgtggcccacccaaacctatgaagggctccgccactg 47561726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 919824 - 919868
Alignment:
Q  259 ggatgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    |||||||||||||||||||| |||| ||||| ||||||| |||||    
T  919824 ggatgggccgtggcccaccccagcccatgaagggctccgtcactg 919868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 48708532 - 48708576
Alignment:
Q  259 ggatgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    |||||||||||||| ||||| |||| ||||| |||||||||||||    
T  48708532 ggatgggccgtggctcaccccagcccatgaagggctccgccactg 48708576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 373 - 535
Target Start/End: Original strand, 42540845 - 42541004
Alignment:
Q  373 attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcc 471  Q
    |||||||||||| |||||||||| |||| |||||||||||| ||| |  || |||||||||||||||| || ||||||||||  ||||||||||||||||    
T  42540845 attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc 42540943  T
Q  472 tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgac 535  Q
    ||   ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  42540944 tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagactgaatacattgac 42541004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 42541004 - 42540845
Alignment:
Q  2 gtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctggg 101  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||  |||||||||| || ||||    
T  42541004 gtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagcaaaactca---caggagatgtgtctcataggaaaacaacaaattgtggg 42540908  T
Q  102 cgaaaaaggattcaattttgatgatgatcaatttcatcaaattccattatc-aaaaggtccaat 164  Q
    |||||||||||| ||  | ||| |||||||||||| |||| |||||||||| ||||||||||||    
T  42540907 cgaaaaaggattgaa-ctggatcatgatcaatttcttcaagttccattatcaaaaaggtccaat 42540845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 36675602 - 36675646
Alignment:
Q  259 ggatgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||    
T  36675602 ggatgggccgtggcccaccccagcccatgaagggctccgccactg 36675646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 26873743 - 26873701
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactgt 304  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||    
T  26873743 tgggccgtggcccaccccagcccatgaagggctccgccactgt 26873701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 43859131 - 43859090
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  43859131 tgggccgtggcccaccctagcccatgaagggctccgccactg 43859090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 44724181 - 44724222
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  44724181 tgggccgtggcccaccccagcccatgaagggctccgccactg 44724222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 1328551 - 1328710
Alignment:
Q  2 gtcaatgtattcggtctctgttagtgtcattaaacatatttggaagagagcaaaactcacagcaggagatgtgtctcatacaaaaacaacaatttctggg 101  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||  |||||||||| || ||||    
T  1328551 gtcaatgtattcagtctctgttagtgtcattaaacgtatttggaagagagcaaaactca---caggagatgtgtctcataggaaaacaacaaattgtggg 1328647  T
Q  102 cgaaaaaggattcaattttgatgatgatcaatttcatcaaattccattatc-aaaaggtccaat 164  Q
    |||||||||||| ||  | ||| |||||||||||| |||| |||||||||| ||||||||||||    
T  1328648 cgaaaaaggattgaa-ctggatcatgatcaatttcttcaagttccattatcaaaaaggtccaat 1328710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 373 - 535
Target Start/End: Complemental strand, 1328710 - 1328551
Alignment:
Q  373 attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcc 471  Q
    |||||||||||| |||||||||| |||| |||||||||||| ||| |  || |||||||||||||||| || ||||||||||  ||||||||||||||||    
T  1328710 attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc 1328612  T
Q  472 tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgac 535  Q
    ||   ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  1328611 tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagactgaatacattgac 1328551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 29126162 - 29126204
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactgt 304  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||    
T  29126162 tgggccgtggcccaccccagcccatgaagggctccgccactgt 29126204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 7160409 - 7160450
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  7160409 tgggccgtggcccaccccagcccatgaaaggctccgccactg 7160450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 18163758 - 18163717
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  18163758 tgggccgtggcccaccccagcccatgaagggctccgccactg 18163717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 50527752 - 50527793
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  50527752 tgggccgtggcccaccccagcccatgaagggctccgccactg 50527793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 52571543 - 52571584
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  52571543 tgggccgtggcccaccccagcccatgaagggctccgccactg 52571584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 36633530 - 36633486
Alignment:
Q  259 ggatgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||| |||||||||||| |||| ||||| |||||||||||||    
T  36633530 ggatgggtcgtggcccaccccagcccatgaagggctccgccactg 36633486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 24797169 - 24797213
Alignment:
Q  259 ggatgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||    
T  24797169 ggatgggccgtggcccaccccagcccatgaagggctccgccactg 24797213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 9830648 - 9830607
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  9830648 tgggccgtggcccaccccagcccatgaagggctccgccactg 9830607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 34934374 - 34934415
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  34934374 tgggccgtggcccaccccagcccatgaagggctccgccactg 34934415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 1183863 - 1183823
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccact 302  Q
    ||||||||||||||||| |||| ||||| ||||||||||||    
T  1183863 tgggccgtggcccaccccagcccatgaagggctccgccact 1183823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 6316917 - 6316877
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccact 302  Q
    ||||||||||||||||| |||| ||||| ||||||||||||    
T  6316917 tgggccgtggcccaccccagcccatgaaaggctccgccact 6316877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 41838074 - 41838114
Alignment:
Q  263 gggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    |||||||||||||||| |||| ||||| |||||||||||||    
T  41838074 gggccgtggcccaccccagcccatgaagggctccgccactg 41838114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 25701535 - 25701579
Alignment:
Q  259 ggatgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||    
T  25701535 ggatgggccgtggcccaccccagcccatgaagggctccgccactg 25701579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 3631299 - 3631258
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  3631299 tgggccgtggcccaccccagcccatgaagggctccgccactg 3631258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 8074357 - 8074398
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  8074357 tgggccgtggcccaccccagcccatgaagggctccgccactg 8074398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 9737824 - 9737865
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  9737824 tgggccgtggcccaccccagcccatgaagggctccgccactg 9737865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 13013372 - 13013413
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  13013372 tgggccgtggcccaccccagcccatgaagggctccgccactg 13013413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 16823174 - 16823133
Alignment:
Q  259 ggatgggccgtggcccacccaagccaatgaatggctccgcca 300  Q
    |||||||||||||||||||| |||| ||||| ||||||||||    
T  16823174 ggatgggccgtggcccaccccagcccatgaagggctccgcca 16823133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 26525347 - 26525388
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  26525347 tgggccgtggcccaccccagcccatgaagggctccgccactg 26525388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 26784952 - 26784911
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    |||||||||||||||| ||||| ||||| |||||||||||||    
T  26784952 tgggccgtggcccacctaagcccatgaagggctccgccactg 26784911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 11207 - 11165
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactgt 304  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||    
T  11207 tgggccgtggcccaccccagcccatgaagggctccgccactgt 11165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 44817667 - 44817709
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactgt 304  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||    
T  44817667 tgggccgtggcccaccccagcccatgaagggctccgccactgt 44817709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 51001516 - 51001474
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactgt 304  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||    
T  51001516 tgggccgtggcccaccccagcccatgaagggctccgccactgt 51001474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 6755869 - 6755828
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  6755869 tgggccgtggcccaccccagcccatgaagggctccgccactg 6755828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 18491227 - 18491186
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  18491227 tgggccgtggcccaccccagcccatgaagggctccgccactg 18491186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 19653762 - 19653803
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  19653762 tgggccgtggcccaccccagcccatgaagggctccgccactg 19653803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 22647155 - 22647110
Alignment:
Q  258 tggatgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||||||  |||| ||||| |||||||||||||    
T  22647155 tggatgggccgtggcccacctcagcccatgaagggctccgccactg 22647110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 36584464 - 36584423
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  36584464 tgggccgtggcccaccccagcccatgaagggctccgccactg 36584423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 40228549 - 40228590
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  40228549 tgggccgtggcccaccccagcccatgaagggctccgccactg 40228590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 52581498 - 52581454
Alignment:
Q  259 ggatgggccgtggcccacccaagccaatgaatggctccgccactgt 304  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||||    
T  52581498 ggatgggccgtggcccaccc-agcccatgaagggctccgccactgt 52581454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 11651085 - 11651125
Alignment:
Q  263 gggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    |||||||||||||||| |||| ||||| |||||||||||||    
T  11651085 gggccgtggcccaccccagcccatgaagggctccgccactg 11651125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 44745704 - 44745748
Alignment:
Q  258 tggatgggccgtggcccacccaagccaatgaatggctccgccact 302  Q
    ||||||||||||||||||||| |||| || || ||||||||||||    
T  44745704 tggatgggccgtggcccaccccagcccattaaaggctccgccact 44745748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 64974 - 64933
Alignment:
Q  262 tgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  64974 tgggccgtggcccaccccagcccatgaagggctccgccactg 64933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 12698532 - 12698491
Alignment:
Q  264 ggccgtggcccacccaagccaatgaatggctccgccactgtg 305  Q
    ||||||||||||||| |||| ||||| |||||||||||||||    
T  12698532 ggccgtggcccaccccagcccatgaagggctccgccactgtg 12698491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 24635585 - 24635629
Alignment:
Q  259 ggatgggccgtggcccacccaagccaatgaatggctccgccactg 303  Q
    |||||||||||||||||||| |||| ||||| |||| ||||||||    
T  24635585 ggatgggccgtggcccaccccagcccatgaagggcttcgccactg 24635629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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