View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10303_low_3 (Length: 463)
Name: NF10303_low_3
Description: NF10303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10303_low_3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 42239159 - 42238716
Alignment:
| Q |
1 |
cattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtgctgcaaaagaagataagcgacggccgtacgctcttcgttgcttaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
42239159 |
cattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtgctgcaaaagaagataagcgacggccttacgctcttcattgcttaaa |
42239060 |
T |
|
| Q |
101 |
aacttgcgtccattatttgttccttcatattcaaatgcatattgtataattactcctaacaaatgataacacaaatttgaatcaaattgaataaagaaga |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42239059 |
aatttgcgtccattatttgttccttcatattcaaatgcatattgtataattactcctaacaaatgataacacaaatttgaatcaaattgaataaagaaga |
42238960 |
T |
|
| Q |
201 |
aatacattaccatcagaattaagtactccttcaagttcactctcatcaactggttgaacattttcttcaaagtcaaactctatatctgaaatgttggtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42238959 |
aatacattaccatcagaattaagtactccttcaagttcactctcatcaactggttgaacattttcttcaaagtcaaactctatatctgaaatgttggtgt |
42238860 |
T |
|
| Q |
301 |
catcaacttcttgtggttggtcttcatcaaacataacaatctctatttcctcttcactttctgccacatattgggtataatgttcctgaattgtttgtgg |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
42238859 |
catcaacttcttgtggttggtcttcgtcaaacataacaatctctatttcctcttcactttcttccacatattgggtataatgttcctgaattgtttgtgg |
42238760 |
T |
|
| Q |
401 |
tatcaacctctatttcatgactttgagtttcatggtgtcattca |
444 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
42238759 |
tatcaacctctgtttcatgactttgagtttcatggtgtaattca |
42238716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 4745942 - 4745571
Alignment:
| Q |
1 |
cattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtgctgcaaaagaagataagcgacggccgtacgctcttcgttgcttaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||| ||| | |||| |||||||||||||||||||| |
|
|
| T |
4745942 |
cattgacgcaatcaattttctagtcccttttttcagtcttcctgcatggctgtgctgcaaaagaagatgagcaatggccttacgctcttcgttgcttaaa |
4745843 |
T |
|
| Q |
101 |
aacttgcgtccattatttgttccttcatattcaaatgcatattgt--ataattactcctaacaaatgataacacaaatttgaatcaaattgaataaagaa |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
4745842 |
aacttgcgtccattatctgttccttcatattgaaatgcatattgtgtataattactcctaacaaatgataacaaaaatttgaatcaaattaaataaagaa |
4745743 |
T |
|
| Q |
199 |
gaaatacattaccatcagaattaagtactccttcaagttcactctcatcaactggttgaacattttcttcaaagtcaaactctatatctgaaatgttggt |
298 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
4745742 |
gaaatacattaccatcagcattaaggactccttcaggttcactctcatcaacatgttgaacattttcttcaaagtcatactctatatctgcaatgttggt |
4745643 |
T |
|
| Q |
299 |
gtcatcaacttcttgtggttggtcttcatcaaacataacaatctctatttcctcttcactttctgccacata |
370 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4745642 |
gtcataaacttcttgtggttggtcttcatcaaacataacaatctctatttcctcttcactttcttccacata |
4745571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 434
Target Start/End: Complemental strand, 32059118 - 32059084
Alignment:
| Q |
400 |
gtatcaacctctatttcatgactttgagtttcatg |
434 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32059118 |
gtatcaacctctatttcatgattttgagtttcatg |
32059084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 17649756 - 17649385
Alignment:
| Q |
1 |
cattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtgctgcaaaagaagataagcgacggccgtacgctcttcgttgcttaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| || | ||| | |||||||||||||||||| ||| |||||| ||| |||||||||||||||| |
|
|
| T |
17649756 |
cattgacgcaatcaattttctagtcccttttttcagtcttcttgcatggctgtgctgcaaaagaagatgagcaacggccttacactcttcgttgcttaaa |
17649657 |
T |
|
| Q |
101 |
aacttgcgtccattatttgttccttcatattcaaatgcatattgt--ataattactcctaacaaatgataacacaaatttgaatcaaattgaataaagaa |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
17649656 |
aacttgcgtccattatctgttccttcatatttaaatgcatattgtgtataattactcctaacaaatgataacaaaaatttgaatcaaattaaataaagaa |
17649557 |
T |
|
| Q |
199 |
gaaatacattaccatcagaattaagtactccttcaagttcactctcatcaactggttgaacattttcttcaaagtcaaactctatatctgaaatgttggt |
298 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
17649556 |
gaaatacattaccatcagcattaaggactccttcaggttcactctcatcaacatgttgaacattttcttcaaagtcatactctatatctgcaatgttggt |
17649457 |
T |
|
| Q |
299 |
gtcatcaacttcttgtggttggtcttcatcaaacataacaatctctatttcctcttcactttctgccacata |
370 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17649456 |
gtcataaacttcttgtggttggtcttcatcaaacataacaatctctatttcctcttcactttcttccacata |
17649385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 1328557 - 1328186
Alignment:
| Q |
1 |
cattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtgctgcaaaagaagataagcgacggccgtacgctcttcgttgcttaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||| | |||| |||||||||||||||||||| |
|
|
| T |
1328557 |
cattgacgcaatcaattttctagtcccttttttcagtcttcctacatggttgtgctgcaaaagaagatgagcaatggccttacgctcttcgttgcttaaa |
1328458 |
T |
|
| Q |
101 |
aacttgcgtccattatttgttccttcatattcaaatgcatattgtat--aattactcctaacaaatgataacacaaatttgaatcaaattgaataaagaa |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
1328457 |
aacttgcgtccattatctgttccttcatattgaaatgcatattgtgtgtaattactcctaacaaatgataacaaaaatttgaatgaaattaaataaagaa |
1328358 |
T |
|
| Q |
199 |
gaaatacattaccatcagaattaagtactccttcaagttcactctcatcaactggttgaacattttcttcaaagtcaaactctatatctgaaatgttggt |
298 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| |||||||||||| ||| |||||||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
1328357 |
gaaatacattaccatcagcattaaggactccttcaggttcactctcattaacatgttgaacattatcttcaaagtcatactctatatctgcaatgttggt |
1328258 |
T |
|
| Q |
299 |
gtcatcaacttcttgtggttggtcttcatcaaacataacaatctctatttcctcttcactttctgccacata |
370 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
1328257 |
gtcataaacttcttgtggttggtcttcatcaaacataacaatctctatttcctattcactttcttccacata |
1328186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 42540998 - 42541369
Alignment:
| Q |
1 |
cattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtgctgcaaaagaagataagcgacggccgtacgctcttcgttgcttaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||| ||| | |||| |||||||||||||||||||| |
|
|
| T |
42540998 |
cattgacgcaatcaattttctagtcccttttttcagtcttcctgcatggctgtgctgcaaaagaagatgagcaatggccttacgctcttcgttgcttaaa |
42541097 |
T |
|
| Q |
101 |
aacttgcgtccattatttgttccttcatattcaaatgcatattgtat--aattactcctaacaaatgataacacaaatttgaatcaaattgaataaagaa |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
42541098 |
aacttgcgtccattatctgttccttcatattgaaatgcatattgtgtgtaattactcctaacaaatgataacaaaaatttgaatgaaattaaataaagaa |
42541197 |
T |
|
| Q |
199 |
gaaatacattaccatcagaattaagtactccttcaagttcactctcatcaactggttgaacattttcttcaaagtcaaactctatatctgaaatgttggt |
298 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| |||||||||||| ||| |||||||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
42541198 |
gaaatacattaccatcagcattaaggactccttcaggttcactctcattaacatgttgaacattatcttcaaagtcatactctatatctgcaatgttggt |
42541297 |
T |
|
| Q |
299 |
gtcatcaacttcttgtggttggtcttcatcaaacataacaatctctatttcctcttcactttctgccacata |
370 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
42541298 |
gtcataaacttcttgtggttggtcttcatcaaacataacaatctatatttcctcttcactttcttccacata |
42541369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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