View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10303_low_4 (Length: 344)
Name: NF10303_low_4
Description: NF10303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10303_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 50 - 326
Target Start/End: Original strand, 43857863 - 43858139
Alignment:
| Q |
50 |
tggtgctaaatgaatgaggtaatagtggaaatttgcatcataaaacaagacctttatttattacttgaaatttgaatacttataagaatctcacaaagtg |
149 |
Q |
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| T |
43857863 |
tggtgctaaatgaatgaggtaatagtggaaatttgcatcataaaacaagagctttatttattacttgaaatttgaacacttataagaatctcacaaagtg |
43857962 |
T |
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| Q |
150 |
cacatgcaacttattgacatacaacatcacaactcaaaacaattgacgacaaaagaatagaaattgaaactacattaaaaaaccagaaaagtgagataaa |
249 |
Q |
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| T |
43857963 |
cacatgcaacttattgacatacaacatcacaactcaatacaattgacgacaaaagaatagaaattgaaactacattaaaaaaccagaaaagtgagataaa |
43858062 |
T |
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| Q |
250 |
caattgttaattaaaccatcatttaattaattaacaacagagcacttccttctaatttgtccattcgaaccagtgag |
326 |
Q |
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| T |
43858063 |
caattgttaattaaaccatcatttaattaattaacaacagaacacttccttctaatttctccattcgaaccagtgag |
43858139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 43859495 - 43859810
Alignment:
| Q |
1 |
gtctaagagtagtaaccactctgaatattcatagagaacacaaattaaatggtgctaaatgaatgaggtaatagtggaaatttgcatcataaaacaagac |
100 |
Q |
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| T |
43859495 |
gtctaagagtagtaaccactctgaatattcatagagaacacaaattaaatggttctaaatgaatgaggtaaatgaggaaactgaaatcataaaacacaac |
43859594 |
T |
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| Q |
101 |
ctttatttattacttgaaatttgaatacttataagaatctcacaaagtgcacatgcaacttattgacatacaacatcacaactcaaaacaa-ttgacgac |
199 |
Q |
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| T |
43859595 |
ctttatt--ttacttg-aatttgaatact--taagaatctcacaaagcgcatttgcaacttattgacatacaacttcacaacccaaaacaatttggcggc |
43859689 |
T |
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| Q |
200 |
aaaagaatagaaattgaaactacattaaaaaaccagaaaagtgagataaacaattgttaattaaaccatcatttaattaattaacaacagagcacttcct |
299 |
Q |
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| T |
43859690 |
aaagtaataaaaattaaaactaaatt--aaattcagaaaaacg----aaacatttgttaattaaactccgaggttattaattaacaacagagcacttcct |
43859783 |
T |
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| Q |
300 |
tctaatttgtccattcgaaccagtgag |
326 |
Q |
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| T |
43859784 |
tctaatttctccattcgaaccagtgag |
43859810 |
T |
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