View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10303_low_5 (Length: 242)
Name: NF10303_low_5
Description: NF10303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10303_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 42239376 - 42239152
Alignment:
| Q |
18 |
catcatgtgtgcaaatatttacacctaacaaaagaaatgttaataacacaaatattaagaaattggaccttttgataatggaatttgatgaaattgatca |
117 |
Q |
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| T |
42239376 |
catcatgtgtgcaaatatttacacctaacaaaagaaatgttaataacacaaatattaagaaattggaccttttgataatggaatttgatgaaattgatcg |
42239277 |
T |
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| Q |
118 |
tcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgaca |
217 |
Q |
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| T |
42239276 |
tgatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgaca |
42239177 |
T |
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| Q |
218 |
ctaacagagaccgaatacattgaca |
242 |
Q |
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| T |
42239176 |
ctaacagagaccgaatacattgaca |
42239152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 17649959 - 17649750
Alignment:
| Q |
32 |
atatttacacctaacaaaagaaatgttaataacacaaatattaagaaa---ttggacctttt-gataatggaatttgatgaaattgatcatcatcaaaat |
127 |
Q |
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| T |
17649959 |
atatttacacctaacaaaataaatgttaataacacaaatattaaaaaaaaattggacctttttgataatggaacttgacgaaattgatcatgatccag-t |
17649861 |
T |
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| Q |
128 |
tgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagaga |
227 |
Q |
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| T |
17649860 |
tcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcctg---tgagtttttctctcttccaaatacgtttaatgacactaacagaga |
17649764 |
T |
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| Q |
228 |
ccgaatacattgac |
241 |
Q |
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| T |
17649763 |
ctgaatacattgac |
17649750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 79 - 241
Target Start/End: Original strand, 42540845 - 42541004
Alignment:
| Q |
79 |
attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcc |
177 |
Q |
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| T |
42540845 |
attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc |
42540943 |
T |
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| Q |
178 |
tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgac |
241 |
Q |
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| T |
42540944 |
tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagactgaatacattgac |
42541004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 1328710 - 1328551
Alignment:
| Q |
79 |
attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcc |
177 |
Q |
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|||||||||||| |||||||||| |||| |||||||||||| ||| | || |||||||||||||||| || |||||||||| |||||||||||||||| |
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| T |
1328710 |
attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc |
1328612 |
T |
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| Q |
178 |
tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgac |
241 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
1328611 |
tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagactgaatacattgac |
1328551 |
T |
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