View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10303_low_7 (Length: 217)
Name: NF10303_low_7
Description: NF10303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10303_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 34512967 - 34513153
Alignment:
| Q |
16 |
aaaatacaatcagacaaaccaatattgggtgacagtacactgttgctttcaatttcttgaggccttgaaaaataacaagtgttatgaatgaatatcttat |
115 |
Q |
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| T |
34512967 |
aaaacacaatcagacaaaccaatattgggtgacagtacactgttgctttcaatttcttgaggccttgaagtgttatgaatgagatcaatgaatatcttat |
34513066 |
T |
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| Q |
116 |
gttgaaagaaacaacgatgatggaattcaagagtacgtaagggatattttccttagctacgagatgacacaatccaaatacatatgc |
202 |
Q |
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| T |
34513067 |
gttgaaagaaacaacgatgatagaattcaagagtacgtaagggatattttcctttgctacgagatgacacaatccaaatacatatgc |
34513153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 34502271 - 34502447
Alignment:
| Q |
16 |
aaaatacaatcagacaaaccaatattgggtgacagtacactgttgctttcaatttcttgaggccttgaaaaataacaagtgttatgaa-----tgaatat |
110 |
Q |
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|||||||||||||||||||||||||||||||||| || || |||||||||||||||| ||||| |||| |||| ||||||| | ||||||| |
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| T |
34502271 |
aaaatacaatcagacaaaccaatattgggtgacacta-----ttactttcaatttcttgagaccttggaaaacaacatgtgttataagatcagtgaatat |
34502365 |
T |
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| Q |
111 |
--cttatgttgaaagaaacaacgatgatggaattcaagagtacgtaagggatattttccttagctacgagatgacacaatcc |
190 |
Q |
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| T |
34502366 |
atcttacgttgaaagaaactacgatgatcaaagtcaagagtatgtaagggatattttcccatactacgagatgacacaatcc |
34502447 |
T |
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