View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10304_low_1 (Length: 401)
Name: NF10304_low_1
Description: NF10304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10304_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 52121244 - 52121520
Alignment:
| Q |
1 |
ctgctatgagagtatcaagtttaatnnnnnnngaatgcaagttgatcgtgtgagaaacagaggaagatgcgtgagatttgagtgtgtgagagaagaaata |
100 |
Q |
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| T |
52121244 |
ctgctatgagagtatcaagtttaattaaaaaagaatgcaagttgatcgtgtgagaaacagaggaagatgcgtgagatttgagtgtgtgagagaagaaata |
52121343 |
T |
|
| Q |
101 |
gagaaaggagaattttaataagaggtgagtgacagagttggttgggattatgtcttcatgtgtttgtatctgcatcaacatgtatagttgtttctagtat |
200 |
Q |
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| T |
52121344 |
gagaaaggagaattttaataagaggtgagtgacagagttggttgggattatgtcttcatgtgtttgtatttgcatcaacatgtatagttgtttctagtat |
52121443 |
T |
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| Q |
201 |
taatgaacagctttcggtcaacattttaaaacatagtaattaacaagtgtgtgatcaaaacgcactctaatttgttt |
277 |
Q |
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| T |
52121444 |
taatgaacagctttcggtcaacattttaaaacatagtaattaacaagtgtgtgatcaaaacgcactctaatttgttt |
52121520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 394
Target Start/End: Original strand, 52121577 - 52121651
Alignment:
| Q |
320 |
taaaaattatatccatcctaccgttttgcttgaagctcacttctaaaatgatgagaccttaaatacttttctgtg |
394 |
Q |
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|||||||||| |||||||||| ||||| ||| | |||||||||||||| | ||||||||||||||||||||||| |
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| T |
52121577 |
taaaaattatgtccatcctacagttttacttagaactcacttctaaaataacgagaccttaaatacttttctgtg |
52121651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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