View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10305_high_19 (Length: 244)
Name: NF10305_high_19
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 15596550 - 15596759
Alignment:
| Q |
24 |
acgataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaagagacgagtaagaaattttttaagcgccaagttcataaatgagaaga |
123 |
Q |
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| T |
15596550 |
acgataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaagagacgagtaagaaatttttgaagcgccaagttcaataatgagaaga |
15596649 |
T |
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| Q |
124 |
ctcaagtagtcgatgaagatgtagtaagagcatgatagacgtagttctacctgactaagtcaagagagtttagaatcatctctagtatggtagtccggta |
223 |
Q |
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| T |
15596650 |
ctcaagtagtcgatgaagatgcagtaagagcatgatagacgtagttctacctgagtaagtcaagagagtttagaatcgtctctagtatggtagtccagta |
15596749 |
T |
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| Q |
224 |
gttcatctca |
233 |
Q |
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||||| |||| |
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| T |
15596750 |
gttcagctca |
15596759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 15596334 - 15596509
Alignment:
| Q |
24 |
acgataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaagagacgagtaagaaattttttaagcgccaagttcataaatgagaaga |
123 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
15596334 |
acgataagtagtggtcagtcaagctggtagccgtttccagtgagaagtgttaagagacgagtaagaaatttttgaagcgccaagttcaataatgagaaga |
15596433 |
T |
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| Q |
124 |
ctcaagtagtcgatgaagatgtagtaagagcatgatagacgtagttctacctgactaagtcaagagagtttagaat |
199 |
Q |
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| T |
15596434 |
ctcaagtagtcgatgaagatgcagtaagagcatgatagacgtagttctacctgagtaagtcaagagagtttagaat |
15596509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 14735069 - 14735154
Alignment:
| Q |
26 |
gataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaagagacgagtaagaaattttttaagcgccaagttca |
111 |
Q |
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||||||||| || |||||||||| ||||| |||| |||||||||| || ||||| |||||||||||| || |||| ||| ||||| |
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| T |
14735069 |
gataagtagccgttagtcaagcggttagccatttctagtgagaagtattgagagatgagtaagaaattcttgaagcaccaggttca |
14735154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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