View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10305_high_5 (Length: 472)
Name: NF10305_high_5
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 27196636 - 27196941
Alignment:
| Q |
10 |
gtgagatgaataaaataatttgaatattcagatattgtgatatggatgataatctttaatgtgtgatttaatcttgtgcatgagtcaccctgccaaaaat |
109 |
Q |
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| T |
27196636 |
gtgagttgtataaaataatttgaatctttggatattgtgatatggatgatcatctttaatgtgtgatttaatcttgtgcatgagtcaccctgccaaaaat |
27196735 |
T |
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| Q |
110 |
tatggttattctccttcctcttacctttattgttatagtcttagctattgcttccaaatggggaagctggaagcagtcgattgattgctactgcaaccat |
209 |
Q |
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| T |
27196736 |
tatggttattctccttcctcttacctttattgttatagtcttagctattgcttccaaatggggaagctggaagcattcgattgattgctactgcaaccat |
27196835 |
T |
|
| Q |
210 |
agctgcataatatttgaaattgagattgaaattaaaaaccaaattcgtcatagtagcaaaactgtaattataccaacttatgaaatttaatattgcgtat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
27196836 |
agctgcataatatttgaaattgagattgaaattaaaaaccaaattcgtcatagtagcaaaactgtaattatacccacgtatgaaatttaatattgcgtat |
27196935 |
T |
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| Q |
310 |
taaatt |
315 |
Q |
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|||||| |
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| T |
27196936 |
taaatt |
27196941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 326 - 454
Target Start/End: Original strand, 27196924 - 27197052
Alignment:
| Q |
326 |
aatattgcgtattaaattatctttagtgagttcttttcatcaaacaccacacacaagagaaagtatctttgaatagagaagcataaatgcaaaaacacca |
425 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27196924 |
aatattgcgtattaaattatctttagtaagttcttttcatcaaacaccacacacaagagaaagtatctatgaatagagaagcataaatgcaaaaacacca |
27197023 |
T |
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| Q |
426 |
cacagaggagaaagcttctatgaatggag |
454 |
Q |
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| T |
27197024 |
cacagaggagaaaacttctatgaatggag |
27197052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 27211678 - 27211795
Alignment:
| Q |
10 |
gtgagatgaataaaataatttgaatattcagatattgtgatatggatgataatctttaatgtgtgatttaatcttgtgcatgagtcaccctgccaaaaat |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| |
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| T |
27211678 |
gtgagttgaataaaataatttgaatattcagatattgtgatatggatgataatctttgatgtgtgatttaatcttgtgcatgagtcaacatgccaaaaat |
27211777 |
T |
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| Q |
110 |
tatggttattctccttcc |
127 |
Q |
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|||||||||||| ||||| |
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| T |
27211778 |
tatggttattctacttcc |
27211795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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