View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10305_high_6 (Length: 440)
Name: NF10305_high_6
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 31038782 - 31039205
Alignment:
| Q |
1 |
acgacaaactggtaaatttggagcaaggcaacagcttgagtgggaaaagcgttccacaaagtctaaagttgaccgacatttgaaactcgtttaaaatttc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31038782 |
acgacaaactggtaaatttgcagcaaggcaacagcttgagtgggaaaagtgttccacaaagtctaaagttgaccgacatttgaaactcgtttaaaatttc |
31038881 |
T |
|
| Q |
101 |
gacaacaaatgatcatcgtcacatttaattaagtagaagtttaagatcctccacgtccttatggttgtgaccgttgattctgccgaactagttgtgattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31038882 |
gacaacaaatgatcatcgtcacatttaattaagtagaagtttaagatcctccacgtccttatggttgtgaccgttgattctgccgaactagttgtgattg |
31038981 |
T |
|
| Q |
201 |
agtcactctctcgattccgaggacaagtaatattatgaattgttacttacaaggaaccgacgtcggttgttattcaaactattttaaagcaatgatccac |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
31038982 |
agtcactctctcggttccgaggacaagtaatattatgaattgttacttacaaggaaccgacatcggttgttcttcaaactattttaaagcaacgatccac |
31039081 |
T |
|
| Q |
301 |
catagaacatacgagacatttttccaccttatataagtcaccttgcaacattgctataactaccatttatttcctcctaatctattcctaattttgattt |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039082 |
catagaccatacgagacatttttccaccctatataagtcaccttgcaacattgctatagctaccatttatttcctcctaatctattcctaattttgattt |
31039181 |
T |
|
| Q |
401 |
ctctatcctttccattaaccttaa |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
31039182 |
ctctatcctttccattaaccttaa |
31039205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 397
Target Start/End: Original strand, 31073103 - 31073224
Alignment:
| Q |
273 |
ttcaaactattttaaagcaatgatccaccatagaacatacgagacatttttccaccttatataagtcaccttgcaacattgctataactaccatttattt |
372 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||| |||| || ||||| ||||| ||| ||| |||| ||||| ||| |||||||||| |||||| |
|
|
| T |
31073103 |
ttcaaactattttcaagcattgatccatcatagttcatatgaagcatttctccacactatc---gtcgccttacaacaatgccataactaccacttattt |
31073199 |
T |
|
| Q |
373 |
cctcctaatctattcctaattttga |
397 |
Q |
| |
|
||| ||| ||||||||||||||||| |
|
|
| T |
31073200 |
cctactattctattcctaattttga |
31073224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University