View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10305_high_8 (Length: 391)
Name: NF10305_high_8
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 363
Target Start/End: Complemental strand, 46358728 - 46358374
Alignment:
| Q |
9 |
agcaaaggtctgaaaacatgctgaagaaggcagaaagaacattaaaagaaagtaaaattcatgtcagccattaaagaggaccattaaggcagaaagaaca |
108 |
Q |
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| T |
46358728 |
agcaaaggtctgaaaacatgctgaagaaggcagaaagaacattaaaagaaagtaaaattcatgtcagccattaaagaggaccattaaggcagaaagaaca |
46358629 |
T |
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| Q |
109 |
aagttatgaattttaaacccttgaatggaaaatggaccattaagttgaagtttaaataaaataaaaacaatgccaatggacttcaactttgatatataaa |
208 |
Q |
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| T |
46358628 |
aagttatgaattttaaacccttgaatggaaaatggaccattaagttgaagtttaaataaaataaaaacaatgccaatggacttcaactttgatatataaa |
46358529 |
T |
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| Q |
209 |
agactcggttccaatatttaaaaccaggtcaaaggaaatcgctaccttaaatttcttattatacattcagtggcattagcctcttctaatgctgcagcag |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46358528 |
agactcggttccaatatttaaaaccaggtcaaaggaaatcgttaccttaaatttcttattatacattcagtggcattggcctcttctaatgctgcagcag |
46358429 |
T |
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| Q |
309 |
cagctgcagaagcaagagctttcctttccattgcatcctggattcagttcacaat |
363 |
Q |
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| T |
46358428 |
cagctgcagaagcaagagctttcctttccattgcatcctggattcagttcacaat |
46358374 |
T |
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