View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10305_low_1 (Length: 894)
Name: NF10305_low_1
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 488 - 881
Target Start/End: Original strand, 6668344 - 6668736
Alignment:
| Q |
488 |
ggagctttgcatgttgtttgtgatatgtgaattgctgaatacttgaattaaaaaatttcttttgttgattgtttgctatatacttttaagagattttcag |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
6668344 |
ggagctttgcatgttgtttgtgatatgtgaattgctgaatacttgaattaaaaaatttcttccgttgattgtttgcaatatacttttcagagattttcag |
6668443 |
T |
|
| Q |
588 |
tagtttaacccttaattttaatttcaacttttaggctattaatcgatgaagaacaaagcttgaatgttctgaaggtggtgtcatgcgataactaacaggt |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6668444 |
tagtttaacccttaattttaatttcaacttttaggctattaaataatgaagaacaa-gcttgaatgctctgaaggtggtgtcatgcgataactaacaggt |
6668542 |
T |
|
| Q |
688 |
gtagataatgtatgtatctctctgcatcagtttgttgttattttctccataattatcctcttccatgatttacatatttttgttacagctattgttataa |
787 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6668543 |
gtagataatgtatatatctctctgcatcagtttgttgttattttctccataattatcctcttccatgatttacatattttcgttacagctattgttataa |
6668642 |
T |
|
| Q |
788 |
ttctttttccccttcattggtttctcttctgcagtgaaaatcaatttagttagcaatgcataatgttgttggtgatctcatctgcgttctgatg |
881 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6668643 |
ttctttttccccttcattggtttctcttctgcagtgaaaatcaatttagttagcaatgcataatgttgttggtgatctcatctgcgttcagatg |
6668736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 6667896 - 6668238
Alignment:
| Q |
16 |
agagcagcataaacgaaccagtaaaaaacccaacaaggaaaagagttctatcgtcattccaaagcttcactatgctttcaggtttctctttttacacatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6667896 |
agagcagcataaacgaaccagtaaaaaacccaacaaggaaaagagttctatcgtcattccaaagcttcactatgctttcaggtttctctttttacacatt |
6667995 |
T |
|
| Q |
116 |
tcgtttactctttcacgtttcttcatttcatatttgaattcctctatttgtgatttaggttaacatattgaaaaacgaaacgaatatatggtgattgata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6667996 |
tcgtttactctttcacgtttcttcatttcatatttgaattcctctatttgtgatttaggttagcatattgaaaaacgaaacgaatatatggtgattgata |
6668095 |
T |
|
| Q |
216 |
tttagatcatcacaggggagagagatccgtagcggagagcggtgtcggtattggaagctactaatctttggtgattgagattttttcttcaatttgcttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6668096 |
tttagatcatcacaggggagagagatccgtagcggagagcggtgtcggtattggaagctactaatctttggtgattgagattttttcttcaatttgcttg |
6668195 |
T |
|
| Q |
316 |
atgaaatttattaaaaaatgattttcatttttagaaaagatgg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6668196 |
atgaaatttattaaaaaatgattttcatttttagaaaagatgg |
6668238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 12529723 - 12529663
Alignment:
| Q |
296 |
ttttttcttcaatttgcttgatgaaatttattaaaaaa--tgattttcatttttagaaaag |
354 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||||| || | |||||||||||||||| |
|
|
| T |
12529723 |
ttttttgttcaatttgattgatgaaatttaataaaaaaactgttgttcatttttagaaaag |
12529663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University