View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10305_low_12 (Length: 387)
Name: NF10305_low_12
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 10210455 - 10210712
Alignment:
| Q |
13 |
cacagagcaattttgatacatctggctgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat |
112 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10210455 |
cacagagcaattttgatacatctagttgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat |
10210554 |
T |
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| Q |
113 |
ctgcagcctttcactggaaatatctttaggagacaaagacggcatcggtcggcgatggtggaatcgtgaagaatgggttcaggataagcagataaataac |
212 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10210555 |
ctgcagcctttcactggatatatctttaggagacaaagacggcatcggtcggcgatggtggaatcgtgaagaatgggttcaggataagcagataaataac |
10210654 |
T |
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| Q |
213 |
aagcattctgagcacctgattcacaaaagtttaagatgtgtataagcacatatgttta |
270 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10210655 |
aagcattctgagaacctgattcacaaaagtttaagatgtgtataagcacatatgttta |
10210712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 55 - 270
Target Start/End: Complemental strand, 10108665 - 10108453
Alignment:
| Q |
55 |
acctggtgatgcatattcccttagccaccattccttt-aatatctctctgactcaacatctgcagcctttcactggaaatatctttaggagacaaagacg |
153 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10108665 |
accttgtgatgcatattcccttagccaccattccttttaatatctctctgactcaacatctgcagcctttcactggaaatatctttaggagacaaagacg |
10108566 |
T |
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| Q |
154 |
gcatcggtcggcgatggtggaatcgtgaagaatgggttcaggataagcagataaataacaagcattctgagcacctgattcacaaaagtttaagatgtgt |
253 |
Q |
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| T |
10108565 |
g----tgtcggcgatggtggaatcgtgaagaatgggttcaggaaaagcagataaataacaagcattctgagaacctgattcacaaaagtttaagatgtgt |
10108470 |
T |
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| Q |
254 |
ataagcacatatgttta |
270 |
Q |
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|||||||| |||||||| |
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| T |
10108469 |
ataagcacttatgttta |
10108453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 10216249 - 10216476
Alignment:
| Q |
13 |
cacagagcaattttgatacatctggctgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat |
112 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
10216249 |
cacagagcaattt-gatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacat |
10216347 |
T |
|
| Q |
113 |
ctgcagcctttcactggaaatatctttaggagacaaagacggcatcggtcggcgatggtggaatcgtgaagaatgggttcaggataagcagataaataac |
212 |
Q |
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|| || | |||||||||||| ||| |||||||||||||| || |||| | |||| |||||| |||||||||||||||||||||||||||| |
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| T |
10216348 |
cttcaacatttcactggaaaaatcattaggagacaaaga----------tggtgatgatagaatggtgaaggatgggttcaggataagcagataaataac |
10216437 |
T |
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| Q |
213 |
aagcattctgagcacctgattcacaaaagtttaagatgt |
251 |
Q |
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| |||||||||| |||| ||||||||||||||||||||| |
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| T |
10216438 |
aggcattctgagaacctaattcacaaaagtttaagatgt |
10216476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 387
Target Start/End: Complemental strand, 10105454 - 10105336
Alignment:
| Q |
270 |
agacaaagattgtgttgatggtattacaaatgatggatctaggataagctgatctgacacctttatacaactcagtcacctgcaacattcgtttacatat |
369 |
Q |
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||||||||||||||||||||||||||| || || ||||| || ||||||||||||||||||| || |||||||||||||||||||||||| |||| | || |
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| T |
10105454 |
agacaaagattgtgttgatggtattacgaaggaaggatccag-ataagctgatctgacacctgtacacaactcagtcacctgcaacattcatttaaaaat |
10105356 |
T |
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| Q |
370 |
gac--agatgaaattgcttt |
387 |
Q |
| |
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||| ||||||||||||||| |
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| T |
10105355 |
gacaaagatgaaattgcttt |
10105336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 267 - 387
Target Start/End: Original strand, 10212821 - 10212939
Alignment:
| Q |
267 |
tttagacaaagattgtgttgatggtattacaaatgatggatctaggataagctgatctgacacctttatacaactcagtcacctgcaacattcgtttaca |
366 |
Q |
| |
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|||| ||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| | |
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| T |
10212821 |
tttaaacaaagattgtgttgatggaattacaaaggatggatc----ataagctgatctaacacctttacgcaactcagtcacctgcaacattcgtttaaa |
10212916 |
T |
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| Q |
367 |
tatgac--agatgaaattgcttt |
387 |
Q |
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||||| ||||||||||||||| |
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| T |
10212917 |
aatgacaaagatgaaattgcttt |
10212939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 373
Target Start/End: Original strand, 9675292 - 9675395
Alignment:
| Q |
270 |
agacaaagattgtgttgatggtattacaaatgatggatctaggataagctgatctgacacctttatacaactcagtcacctgcaacattcgtttacatat |
369 |
Q |
| |
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||||||| | ||||||||||| |||||||| |||||||| ||||||| ||||||| ||||||| |||| ||||||| | |||| ||||| ||||| | || |
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| T |
9675292 |
agacaaacactgtgttgatggaattacaaaggatggatccaggataaactgatctaacaccttcatacgactcagtgatctgcgacattagtttaaaaat |
9675391 |
T |
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| Q |
370 |
gaca |
373 |
Q |
| |
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|||| |
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| T |
9675392 |
gaca |
9675395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 9683075 - 9683170
Alignment:
| Q |
13 |
cacagagcaattttgatacatctggctgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat |
112 |
Q |
| |
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||||||||||||| ||||||||||||| |||| ||||||| | |||||||||||||| |||| |||||||||||||| ||| ||||||||||| |
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| T |
9683075 |
cacagagcaattt-gatacatctggctttatggaactccttg------tgatgcatattcccctagcaaccattcctttaatgtctacatgactcaacat |
9683167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 9683423 - 9683495
Alignment:
| Q |
196 |
ataagcagataaataacaagcattctgagcacctgattcacaaaagtttaagatgtgtataagcacatatgtt |
268 |
Q |
| |
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|||||||| ||||||| |||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||| |
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| T |
9683423 |
ataagcagggaaataaccggcattctgagaacctgatacacgaaagtttaagatgcatataagcatatatgtt |
9683495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 10102629 - 10102593
Alignment:
| Q |
336 |
acaactcagtcacctgcaacattcgtttacatatgac |
372 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
10102629 |
acaactcagtcacctgcaacattcgtttacaaatgac |
10102593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 10105248 - 10105184
Alignment:
| Q |
196 |
ataagcagataaataacaagcattctgagcacctgattcacaaaagtttaagatgtgtataagca |
260 |
Q |
| |
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||||||||| |||||||| ||||| | | ||||||||||||||| |||||||||| ||||||| |
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| T |
10105248 |
ataagcagagaaataacaggcatttggcgaacctgattcacaaaattttaagatgtacataagca |
10105184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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