View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10305_low_13 (Length: 347)

Name: NF10305_low_13
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10305_low_13
NF10305_low_13
[»] chr8 (13 HSPs)
chr8 (78-266)||(21470150-21470340)
chr8 (57-147)||(21470370-21470461)
chr8 (296-339)||(21470077-21470120)
chr8 (72-123)||(5422736-5422787)
chr8 (58-121)||(17818071-17818136)
chr8 (69-123)||(23389014-23389068)
chr8 (69-117)||(5422936-5422984)
chr8 (58-101)||(28898755-28898798)
chr8 (57-123)||(34227321-34227388)
chr8 (57-118)||(2873448-2873510)
chr8 (80-118)||(24177721-24177759)
chr8 (76-119)||(8441916-8441960)
chr8 (76-115)||(35773150-35773190)
[»] chr3 (8 HSPs)
chr3 (76-119)||(31073990-31074033)
chr3 (78-121)||(45151955-45151998)
chr3 (69-119)||(11413873-11413923)
chr3 (76-123)||(34519871-34519920)
chr3 (80-121)||(13439901-13439942)
chr3 (71-118)||(14220696-14220744)
chr3 (71-118)||(14224923-14224971)
chr3 (79-119)||(35359660-35359700)
[»] chr1 (15 HSPs)
chr1 (57-117)||(17213305-17213367)
chr1 (71-118)||(20158977-20159024)
chr1 (68-107)||(43192965-43193004)
chr1 (57-116)||(13693348-13693409)
chr1 (59-121)||(18035610-18035676)
chr1 (72-120)||(22151890-22151938)
chr1 (60-121)||(23484708-23484771)
chr1 (57-115)||(5457083-5457142)
chr1 (78-130)||(16639457-16639511)
chr1 (71-110)||(43901345-43901384)
chr1 (76-123)||(3787233-3787282)
chr1 (77-123)||(19792317-19792363)
chr1 (79-121)||(25170952-25170994)
chr1 (69-118)||(26190729-26190780)
chr1 (76-117)||(26743053-26743096)
[»] chr2 (13 HSPs)
chr2 (57-118)||(1975796-1975858)
chr2 (76-118)||(36795155-36795197)
chr2 (57-118)||(18048816-18048877)
chr2 (57-117)||(9419813-9419875)
chr2 (57-122)||(31122271-31122337)
chr2 (76-121)||(33315440-33315486)
chr2 (73-117)||(943842-943887)
chr2 (69-118)||(16204631-16204680)
chr2 (76-121)||(25077424-25077469)
chr2 (78-119)||(41100692-41100733)
chr2 (57-117)||(31121976-31122035)
chr2 (86-134)||(45161406-45161454)
chr2 (76-123)||(45464626-45464674)
[»] chr4 (11 HSPs)
chr4 (69-118)||(12388085-12388134)
chr4 (68-123)||(31856887-31856943)
chr4 (70-123)||(6439179-6439233)
chr4 (80-118)||(17696401-17696439)
chr4 (69-115)||(26040832-26040877)
chr4 (77-121)||(16588977-16589022)
chr4 (71-119)||(19909335-19909384)
chr4 (69-121)||(31226507-31226560)
chr4 (57-120)||(18509980-18510044)
chr4 (69-118)||(22853961-22854012)
chr4 (57-118)||(41325527-41325590)
[»] chr7 (12 HSPs)
chr7 (57-97)||(15814130-15814170)
chr7 (79-123)||(35097782-35097826)
chr7 (57-121)||(47370148-47370214)
chr7 (69-118)||(21444191-21444241)
chr7 (76-122)||(22317213-22317259)
chr7 (77-123)||(36374141-36374187)
chr7 (77-110)||(11576905-11576938)
chr7 (78-118)||(17167500-17167541)
chr7 (76-117)||(26254559-26254600)
chr7 (69-117)||(35158183-35158232)
chr7 (57-118)||(442533-442596)
chr7 (69-122)||(13263864-13263919)
[»] chr6 (7 HSPs)
chr6 (57-117)||(15881327-15881387)
chr6 (80-127)||(11107869-11107918)
chr6 (57-119)||(16659776-16659838)
chr6 (57-118)||(26475762-26475824)
chr6 (80-117)||(10343499-10343536)
chr6 (76-115)||(10546194-10546234)
chr6 (69-118)||(22362617-22362668)
[»] chr5 (11 HSPs)
chr5 (59-118)||(31312769-31312829)
chr5 (78-121)||(16435746-16435789)
chr5 (80-123)||(20627953-20627996)
chr5 (57-119)||(23188627-23188690)
chr5 (79-118)||(24802029-24802068)
chr5 (57-118)||(4413926-4413988)
chr5 (69-118)||(25962801-25962851)
chr5 (80-117)||(6897121-6897160)
chr5 (76-121)||(7243308-7243355)
chr5 (59-119)||(12068082-12068142)
chr5 (69-120)||(29690959-29691011)
[»] scaffold1462 (1 HSPs)
scaffold1462 (78-123)||(414-460)
[»] scaffold0258 (2 HSPs)
scaffold0258 (77-118)||(18642-18684)
scaffold0258 (80-117)||(18937-18974)
[»] scaffold0014 (1 HSPs)
scaffold0014 (80-118)||(13944-13982)


Alignment Details
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 78 - 266
Target Start/End: Complemental strand, 21470340 - 21470150
Alignment:
Q  78 gaaaatgacctatattacagagg-taaaacactactaaccctaaattctttatattttggaaagccta---ttgacctannnnnnnnnnnnnnnnnnnnn 173  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||                         
T  21470340 gaaaatgacctatattacagagggtaaaacactactaaccctaaattctttatattttggaaagcctattgttgacctaatttttttttttttttttt-- 21470243  T
Q  174 gcttcatatgactattgttagaaatttagttgattaggattcagttggtattttattttatttcagtgggtatgtttcaattgatatgtttag 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21470242 gcttcatatgactattgttagaaatttagttgattaggattcagttggtattttattttatttcagtgggtatgtttcaattgatatgtttag 21470150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 21470461 - 21470370
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacagagg-taaaacactactaaccctaaattctttatattttggaaagcctattg 147  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21470461 tattttacagagggtaaacctgaaaatgacctatattacagagggtaaaacactactaaccctaaattctttatattttggaaagcctattg 21470370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 21470120 - 21470077
Alignment:
Q  296 aagaattgacatgttttatttatctgagttggtgactctctgct 339  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  21470120 aagaattgacatgttttatttatctgagttggtgactctttgct 21470077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 5422787 - 5422736
Alignment:
Q  72 aaacccgaaaatgacctatattacagaggtaaaacactactaaccctaaatt 123  Q
    |||| ||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  5422787 aaactcgaaaatgacctatattacaggggtaaatcactattaaccctaaatt 5422736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 17818071 - 17818136
Alignment:
Q  58 attttatagaaggtaaacccgaaaatgacctatattacagagg--taaaacactactaaccctaaa 121  Q
    |||||| || ||||||||||| |||||||||||||||||| ||  |||||||||| ||||||||||    
T  17818071 attttacaggaggtaaacccggaaatgacctatattacagggggataaaacactattaaccctaaa 17818136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 23389068 - 23389014
Alignment:
Q  69 ggtaaacccgaaaatgacctatattacagaggtaaaacactactaaccctaaatt 123  Q
    |||||| |||||||||| ||||||||||| |||||||||| | ||||||||||||    
T  23389068 ggtaaaaccgaaaatgatctatattacaggggtaaaacacaattaaccctaaatt 23389014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 5422936 - 5422984
Alignment:
Q  69 ggtaaacccgaaaatgacctatattacagaggtaaaacactactaaccc 117  Q
    ||||||||| |||||||||||||||||| |||||||||| || ||||||    
T  5422936 ggtaaacccaaaaatgacctatattacaaaggtaaaacaatattaaccc 5422984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 28898798 - 28898755
Alignment:
Q  58 attttatagaaggtaaacccgaaaatgacctatattacagaggt 101  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||    
T  28898798 attttatagaagggaaaaccgaaaatgacatatattacagaggt 28898755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 34227388 - 34227321
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacagagg-taaaacactactaaccctaaatt 123  Q
    ||||||| || || |||| ||| |||||||||||||||||| || |||||||||| ||||||||||||    
T  34227388 tattttacaggagataaaaccggaaatgacctatattacagggggtaaaacactattaaccctaaatt 34227321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 2873510 - 2873448
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattaca-gaggtaaaacactactaaccct 118  Q
    ||||||| ||| |||||| ||||||||||||||||||||| | ||||||||| || |||||||    
T  2873510 tattttacagagggtaaaaccgaaaatgacctatattacagggggtaaaacattattaaccct 2873448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 24177759 - 24177721
Alignment:
Q  80 aaatgacctatattacagaggtaaaacactactaaccct 118  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  24177759 aaatgacctatattacaggggtaaaacactattaaccct 24177721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 8441960 - 8441916
Alignment:
Q  76 ccgaaaatgacctatattaca-gaggtaaaacactactaacccta 119  Q
    ||||||||||||||||||||| | |||||||||||| ||||||||    
T  8441960 ccgaaaatgacctatattacatggggtaaaacactattaacccta 8441916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 35773190 - 35773150
Alignment:
Q  76 ccgaaaatgacctatattacaga-ggtaaaacactactaac 115  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  35773190 ccgaaaatgacctatattacagagggtaaaacactattaac 35773150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 31073990 - 31074033
Alignment:
Q  76 ccgaaaatgacctatattacagaggtaaaacactactaacccta 119  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  31073990 ccgaaaatgacctatattacaggggtaaaacactattaacccta 31074033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 45151955 - 45151998
Alignment:
Q  78 gaaaatgacctatattacagaggtaaaacactactaaccctaaa 121  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||    
T  45151955 gaaaatcacctatattacagaggtaaaatactattaaccctaaa 45151998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 11413923 - 11413873
Alignment:
Q  69 ggtaaacccgaaaatgacctatattacagaggtaaaacactactaacccta 119  Q
    |||||||||||||||| |||||||||||| |||||| ||||| ||| ||||    
T  11413923 ggtaaacccgaaaatggcctatattacaggggtaaagcactattaatccta 11413873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 34519920 - 34519871
Alignment:
Q  76 ccgaaaatgacctatattacagaggt--aaaacactactaaccctaaatt 123  Q
    |||||||||||||||||||||| |||  ||||||||| ||||||||||||    
T  34519920 ccgaaaatgacctatattacaggggtgaaaaacactattaaccctaaatt 34519871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 13439901 - 13439942
Alignment:
Q  80 aaatgacctatattacagaggtaaaacactactaaccctaaa 121  Q
    ||||||| |||||||||| |||||||||||| ||||||||||    
T  13439901 aaatgacatatattacaggggtaaaacactattaaccctaaa 13439942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 14220696 - 14220744
Alignment:
Q  71 taaacccgaaaatgacctatattacaga-ggtaaaacactactaaccct 118  Q
    |||| ||||||||||||||||||||||| ||||||| |||| |||||||    
T  14220696 taaaaccgaaaatgacctatattacagagggtaaaatactattaaccct 14220744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 14224923 - 14224971
Alignment:
Q  71 taaacccgaaaatgacctatattacaga-ggtaaaacactactaaccct 118  Q
    |||| ||||||||||||||||||||||| ||||||| |||| |||||||    
T  14224923 taaaaccgaaaatgacctatattacagagggtaaaatactattaaccct 14224971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 35359660 - 35359700
Alignment:
Q  79 aaaatgacctatattacagaggtaaaacactactaacccta 119  Q
    ||||||||||||||||||| |||||||||| | ||||||||    
T  35359660 aaaatgacctatattacaggggtaaaacaccattaacccta 35359700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 17213367 - 17213305
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacagagg--taaaacactactaaccc 117  Q
    |||||||||| ||||||||| |||||||||||||||||||| ||  |||||||||| ||||||    
T  17213367 tattttataggaggtaaacctgaaaatgacctatattacagggggataaaacactattaaccc 17213305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 20158977 - 20159024
Alignment:
Q  71 taaacccgaaaatgacctatattacagaggtaaaacactactaaccct 118  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||||    
T  20158977 taaaaccgaaaatgacctatattacaggggtaaaacactattaaccct 20159024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 43193004 - 43192965
Alignment:
Q  68 aggtaaacccgaaaatgacctatattacagaggtaaaaca 107  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  43193004 aggtaaacccgaaaataacctatattacagaggtaaaaca 43192965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 13693409 - 13693348
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattaca--gaggtaaaacactactaacc 116  Q
    ||||||| ||| ||||||||||||||||||||||||||||  | |||||||||||| |||||    
T  13693409 tattttacagagggtaaacccgaaaatgacctatattacaagggggtaaaacactattaacc 13693348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 18035610 - 18035676
Alignment:
Q  59 ttttatagaaggtaaacccgaaaatgacct-atattaca---gaggtaaaacactactaaccctaaa 121  Q
    ||||| |||||||||| ||||||||||||| ||||||||   |||||||||||||| ||||||||||    
T  18035610 ttttacagaaggtaaatccgaaaatgacctaatattacaggggaggtaaaacactagtaaccctaaa 18035676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 22151938 - 22151890
Alignment:
Q  72 aaacccgaaaatgacctatattacagaggtaaaacactactaaccctaa 120  Q
    |||||||||||||||||||||||| |  ||||||||||| |||||||||    
T  22151938 aaacccgaaaatgacctatattacgggagtaaaacactattaaccctaa 22151890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 23484771 - 23484708
Alignment:
Q  60 tttatagaaggtaaacccgaaaatgacctatattacaga--ggtaaaacactactaaccctaaa 121  Q
    |||||||| || ||| |||||||||||||||||||||||  |||||||||| | ||||||||||    
T  23484771 tttatagaggggaaaaccgaaaatgacctatattacagaggggtaaaacaccattaaccctaaa 23484708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 5457142 - 5457083
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattaca-gaggtaaaacactactaac 115  Q
    ||||||||||| |||||| | ||||||||||||||||||| | |||||||||||| ||||    
T  5457142 tattttatagagggtaaaactgaaaatgacctatattacagggggtaaaacactattaac 5457083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 16639511 - 16639457
Alignment:
Q  78 gaaaatgacctatattaca--gaggtaaaacactactaaccctaaattctttata 130  Q
    |||||||||||||||||||  |||||||||||||| |||||| || |||||||||    
T  16639511 gaaaatgacctatattacatggaggtaaaacactattaacccaaacttctttata 16639457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 43901345 - 43901384
Alignment:
Q  71 taaacccgaaaatgacctatattacagaggtaaaacacta 110  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  43901345 taaacccgaaaatgacctatattacaagggtaaaacacta 43901384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 3787282 - 3787233
Alignment:
Q  76 ccgaaaatgacctatattacagaggt--aaaacactactaaccctaaatt 123  Q
    |||||||||||||||||||||| |||  ||||||||| ||||||||||||    
T  3787282 ccgaaaatgacctatattacaggggtgaaaaacactattaaccctaaatt 3787233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 19792363 - 19792317
Alignment:
Q  77 cgaaaatgacctatattacagaggtaaaacactactaaccctaaatt 123  Q
    ||||||||||||||||||||||||||||| || | ||||| ||||||    
T  19792363 cgaaaatgacctatattacagaggtaaaataccattaaccttaaatt 19792317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 25170994 - 25170952
Alignment:
Q  79 aaaatgacctatattacagaggtaaaacactactaaccctaaa 121  Q
    ||||||||||||||||||| |||||||||| | ||||||||||    
T  25170994 aaaatgacctatattacaggggtaaaacaccattaaccctaaa 25170952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 26190780 - 26190729
Alignment:
Q  69 ggtaaacccgaaaatgacctatattaca--gaggtaaaacactactaaccct 118  Q
    |||||| |||||||||||||||||||||  | |||||||||||| |||||||    
T  26190780 ggtaaaaccgaaaatgacctatattacaagggggtaaaacactattaaccct 26190729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 26743053 - 26743096
Alignment:
Q  76 ccgaaaatgacctatattacagaggt--aaaacactactaaccc 117  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||    
T  26743053 ccgaaaatgacctatattacagaggtgaaaaacactattaaccc 26743096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 1975796 - 1975858
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacag-aggtaaaacactactaaccct 118  Q
    ||||||| || ||||||| |||||||| ||||||||||||| ||||||||||||| |||||||    
T  1975796 tattttacaggaggtaaaaccgaaaataacctatattacagaaggtaaaacactattaaccct 1975858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 36795197 - 36795155
Alignment:
Q  76 ccgaaaatgacctatattacagaggtaaaacactactaaccct 118  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  36795197 ccgaaaatgacctatattacaggggtaaaacactattaaccct 36795155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 18048877 - 18048816
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacagaggtaaaacactactaaccct 118  Q
    ||||||||||  |||||| || ||||||||||||||||||| |||||| ||||| |||||||    
T  18048877 tattttatagggggtaaaaccaaaaatgacctatattacaggggtaaagcactattaaccct 18048816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 9419813 - 9419875
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacagagg--taaaacactactaaccc 117  Q
    ||||||||||| |||||| | |||||||||||||||||||| ||  |||||||||| ||||||    
T  9419813 tattttatagagggtaaaactgaaaatgacctatattacaggggactaaaacactattaaccc 9419875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 31122271 - 31122337
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatatta-cagaggtaaaacactactaaccctaaat 122  Q
    ||||||| |||||  ||| |||||||||||||||||||  || |||||||||||| |||||||||||    
T  31122271 tattttacagaagaaaaaaccgaaaatgacctatattataaggggtaaaacactattaaccctaaat 31122337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 33315440 - 33315486
Alignment:
Q  76 ccgaaaatgacctatattacaga-ggtaaaacactactaaccctaaa 121  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||||    
T  33315440 ccgaaaatgacctatattacagagggtaaaatactattaaccctaaa 33315486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 943887 - 943842
Alignment:
Q  73 aacccgaaaatgacctatattaca-gaggtaaaacactactaaccc 117  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||    
T  943887 aacccgaaaatgacatatattacaggaggtaaaacactattaaccc 943842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 16204631 - 16204680
Alignment:
Q  69 ggtaaacccgaaaatgacctatattacagaggtaaaacactactaaccct 118  Q
    |||||| ||| ||||||| |||||||||||||||||| |||| |||||||    
T  16204631 ggtaaaaccggaaatgacgtatattacagaggtaaaatactattaaccct 16204680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 25077469 - 25077424
Alignment:
Q  76 ccgaaaatgacctatattacagaggtaaaacactactaaccctaaa 121  Q
    |||||||||||||||||||||||||||||   ||| ||||||||||    
T  25077469 ccgaaaatgacctatattacagaggtaaagatctattaaccctaaa 25077424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 41100733 - 41100692
Alignment:
Q  78 gaaaatgacctatattacagaggtaaaacactactaacccta 119  Q
    |||||||||||||||||||| ||||||||| || ||||||||    
T  41100733 gaaaatgacctatattacaggggtaaaacagtattaacccta 41100692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 31122035 - 31121976
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacagaggtaaaacactactaaccc 117  Q
    ||||||| |||||||||||| ||||||||||||||||  || |||||||| ||| ||||||    
T  31122035 tattttacagaaggtaaacc-gaaaatgacctatattgtagtggtaaaacgctattaaccc 31121976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 45161406 - 45161454
Alignment:
Q  86 cctatattacagaggtaaaacactactaaccctaaattctttatatttt 134  Q
    |||||||||||| |||||||||||| |||||||  ||| ||||||||||    
T  45161406 cctatattacaggggtaaaacactattaaccctttattttttatatttt 45161454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 45464626 - 45464674
Alignment:
Q  76 ccgaaaatgacctatattaca-gaggtaaaacactactaaccctaaatt 123  Q
    ||||||||||||||||||||| |||||||||  ||| ||||||||||||    
T  45464626 ccgaaaatgacctatattacaggaggtaaaaacctattaaccctaaatt 45464674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 12388134 - 12388085
Alignment:
Q  69 ggtaaacccgaaaatgacctatattacagaggtaaaacactactaaccct 118  Q
    |||||| ||| |||||||||||||||||| |||||||||||| |||||||    
T  12388134 ggtaaaaccggaaatgacctatattacaggggtaaaacactattaaccct 12388085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 31856943 - 31856887
Alignment:
Q  68 aggtaaacccgaaaatgacctatattacaga-ggtaaaacactactaaccctaaatt 123  Q
    |||||||  |||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  31856943 aggtaaaatcgaaaatgacctatattacagagggtaaaacactattaatcctaaatt 31856887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 6439233 - 6439179
Alignment:
Q  70 gtaaacccgaaaatgacctatattaca-gaggtaaaacactactaaccctaaatt 123  Q
    ||||| ||||||||||||||||||||| | |||||| ||||| ||||||||||||    
T  6439233 gtaaaaccgaaaatgacctatattacagggggtaaagcactattaaccctaaatt 6439179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 17696401 - 17696439
Alignment:
Q  80 aaatgacctatattacagaggtaaaacactactaaccct 118  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  17696401 aaatgacctatattacaggggtaaaacactattaaccct 17696439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 26040832 - 26040877
Alignment:
Q  69 ggtaaacccgaaaatgacctatattacagaggtaaaacactactaac 115  Q
    |||||| |||||||||||||||||||||| |||||||||||| ||||    
T  26040832 ggtaaaaccgaaaatgacctatattacag-ggtaaaacactattaac 26040877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 16589022 - 16588977
Alignment:
Q  77 cgaaaatgacctatattacag-aggtaaaacactactaaccctaaa 121  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||    
T  16589022 cgaaaataacctatattacaggaggtaaaacactattaaccctaaa 16588977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 19909335 - 19909384
Alignment:
Q  71 taaacccgaaaatgacctatattaca-gaggtaaaacactactaacccta 119  Q
    |||||| ||||||||||||||||||| | |||||||||||| ||||||||    
T  19909335 taaacctgaaaatgacctatattacagggggtaaaacactattaacccta 19909384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 31226507 - 31226560
Alignment:
Q  69 ggtaaacccgaaaatgacctatattaca-gaggtaaaacactactaaccctaaa 121  Q
    |||||| ||| ||||||||||||||||| | |||||||||||| ||||||||||    
T  31226507 ggtaaaaccggaaatgacctatattacagggggtaaaacactattaaccctaaa 31226560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 18510044 - 18509980
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacagagg-taaaacactactaaccctaa 120  Q
    ||||||||||  |||||| | | |||||||||||||||||| || |||||||||| |||||||||    
T  18510044 tattttatagggggtaaaactggaaatgacctatattacaggggataaaacactattaaccctaa 18509980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 22854012 - 22853961
Alignment:
Q  69 ggtaaacccgaaaatgacctatattaca--gaggtaaaacactactaaccct 118  Q
    |||||| |||||||||||||||||||||  | |||||||||||| |||||||    
T  22854012 ggtaaaaccgaaaatgacctatattacaagggggtaaaacactattaaccct 22853961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 41325527 - 41325590
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattaca--gaggtaaaacactactaaccct 118  Q
    ||||||| || ||||||| |||||||||| ||||||||||  | |||||||||||| |||||||    
T  41325527 tattttacaggaggtaaaaccgaaaatgatctatattacaggggggtaaaacactattaaccct 41325590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 15814130 - 15814170
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacag 97  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  15814130 tattttatagagggtaaactcgaaaatgacctatattacag 15814170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 35097782 - 35097826
Alignment:
Q  79 aaaatgacctatattacagaggtaaaacactactaaccctaaatt 123  Q
    ||||||||||||||||||| |||||||||| | ||||||||||||    
T  35097782 aaaatgacctatattacaggggtaaaacaccattaaccctaaatt 35097826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 47370214 - 47370148
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacagagg--taaaacactactaaccctaaa 121  Q
    ||||||||||  |||||| ||| |||||||||||||||||| ||  |||||||||| ||||||||||    
T  47370214 tattttatagggggtaaaaccggaaatgacctatattacagggggctaaaacactattaaccctaaa 47370148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 21444191 - 21444241
Alignment:
Q  69 ggtaaacccgaaaatgacctatattaca-gaggtaaaacactactaaccct 118  Q
    |||||| ||||||||||||||||||||| | |||||||||||| |||||||    
T  21444191 ggtaaaaccgaaaatgacctatattacagggggtaaaacactattaaccct 21444241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 22317259 - 22317213
Alignment:
Q  76 ccgaaaatgacctatattacagaggtaaaacactactaaccctaaat 122  Q
    |||||||||||||||||||||  |||||||||||| |||||| ||||    
T  22317259 ccgaaaatgacctatattacaagggtaaaacactattaacccaaaat 22317213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 36374187 - 36374141
Alignment:
Q  77 cgaaaatgacctatattacagaggtaaaacactactaaccctaaatt 123  Q
    |||||||||||||||||| || |||||||||||| |||||| |||||    
T  36374187 cgaaaatgacctatattataggggtaaaacactattaacccaaaatt 36374141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 11576905 - 11576938
Alignment:
Q  77 cgaaaatgacctatattacagaggtaaaacacta 110  Q
    ||||||||||||||||||||| ||||||||||||    
T  11576905 cgaaaatgacctatattacaggggtaaaacacta 11576938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 17167541 - 17167500
Alignment:
Q  78 gaaaatgacctatattacaga-ggtaaaacactactaaccct 118  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  17167541 gaaaatgacctatattacagatggtaaaacactattaaccct 17167500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 26254600 - 26254559
Alignment:
Q  76 ccgaaaatgacctatattacagaggtaaaacactactaaccc 117  Q
    |||||||||||||||||| ||| |||||||||||| ||||||    
T  26254600 ccgaaaatgacctatattgcaggggtaaaacactattaaccc 26254559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 35158232 - 35158183
Alignment:
Q  69 ggtaaacccgaaaatgacctatattacagagg-taaaacactactaaccc 117  Q
    |||||| |||||||||||||||||||||| || |||||||||| ||||||    
T  35158232 ggtaaaaccgaaaatgacctatattacaggggataaaacactattaaccc 35158183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 442596 - 442533
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacagagg--taaaacactactaaccct 118  Q
    ||||||||||  |||||| ||| |||||||||||||||||| ||  |||||||||| |||||||    
T  442596 tattttatagggggtaaaaccggaaatgacctatattacagggggctaaaacactattaaccct 442533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 13263919 - 13263864
Alignment:
Q  69 ggtaaacccgaaaatgacctatattaca--gaggtaaaacactactaaccctaaat 122  Q
    |||||| ||| |||||||||||||||||  | |||||||||||| |||||||||||    
T  13263919 ggtaaaaccggaaatgacctatattacaggggggtaaaacactattaaccctaaat 13263864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 15881327 - 15881387
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacagaggtaaaacactactaaccc 117  Q
    ||||||| || ||||||| |  |||||||||||||||||||||||||| ||||| ||||||    
T  15881327 tattttacaggaggtaaaacaaaaaatgacctatattacagaggtaaagcactattaaccc 15881387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 11107869 - 11107918
Alignment:
Q  80 aaatgacctatattacag--aggtaaaacactactaaccctaaattcttt 127  Q
    ||||||||||||||||||  ||||||||||||| |||||||| |||||||    
T  11107869 aaatgacctatattacaggaaggtaaaacactattaaccctatattcttt 11107918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 16659776 - 16659838
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattacagaggtaaaacactactaacccta 119  Q
    ||||||| || ||||||| ||| |||| || |||||||||| |||||||||||| ||||||||    
T  16659776 tattttacaggaggtaaaaccggaaataacttatattacaggggtaaaacactattaacccta 16659838  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 26475824 - 26475762
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattac-agaggtaaaacactactaaccct 118  Q
    ||||||| || ||||||| || ||||||||||||||||| || |||||||||||| |||||||    
T  26475824 tattttacaggaggtaaaaccaaaaatgacctatattacaaggggtaaaacactattaaccct 26475762  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 10343536 - 10343499
Alignment:
Q  80 aaatgacctatattacagaggtaaaacactactaaccc 117  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  10343536 aaatgacctatattacaggggtaaaacactattaaccc 10343499  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 10546194 - 10546234
Alignment:
Q  76 ccgaaaatgacctatattacaga-ggtaaaacactactaac 115  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  10546194 ccgaaaatgacctatattacagagggtaaaacactattaac 10546234  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 22362668 - 22362617
Alignment:
Q  69 ggtaaacccgaaaatgacctatattaca--gaggtaaaacactactaaccct 118  Q
    |||||| ||| |||||||||||||||||  |||||||||||||| |||||||    
T  22362668 ggtaaaaccggaaatgacctatattacacggaggtaaaacactattaaccct 22362617  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 31312769 - 31312829
Alignment:
Q  59 ttttatagaaggtaaacccgaaaatgacctatattaca-gaggtaaaacactactaaccct 118  Q
    ||||| || ||||||| ||||||||||||||||||||| | |||||||||||| |||||||    
T  31312769 ttttacaggaggtaaaaccgaaaatgacctatattacagggggtaaaacactattaaccct 31312829  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 16435789 - 16435746
Alignment:
Q  78 gaaaatgacctatattacagaggtaaaacactactaaccctaaa 121  Q
    |||||||||||||||||||| |||||||||||  ||||||||||    
T  16435789 gaaaatgacctatattacaggggtaaaacactgttaaccctaaa 16435746  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 20627996 - 20627953
Alignment:
Q  80 aaatgacctatattacagaggtaaaacactactaaccctaaatt 123  Q
    |||||||||||||||||| |||||||||||| |||||| |||||    
T  20627996 aaatgacctatattacaggggtaaaacactattaacccaaaatt 20627953  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 23188690 - 23188627
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattaca-gaggtaaaacactactaacccta 119  Q
    ||||||| |||| | ||| |||||||| |||||||||||| |||||||||||||| ||||||||    
T  23188690 tattttacagaatggaaaaccgaaaataacctatattacaggaggtaaaacactattaacccta 23188627  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 24802029 - 24802068
Alignment:
Q  79 aaaatgacctatattacagaggtaaaacactactaaccct 118  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  24802029 aaaatgacctatattacaggggtaaaacactattaaccct 24802068  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 4413988 - 4413926
Alignment:
Q  57 tattttatagaaggtaaacccgaaaatgacctatattaca-gaggtaaaacactactaaccct 118  Q
    ||||||| || ||||||| ||| ||||||||||||||||| | |||||||||||| |||||||    
T  4413988 tattttacaggaggtaaaaccggaaatgacctatattacagggggtaaaacactattaaccct 4413926  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 25962851 - 25962801
Alignment:
Q  69 ggtaaacccgaaaatgacctatattaca-gaggtaaaacactactaaccct 118  Q
    |||||| ||||||||||||||||||||| | |||||||||||| |||||||    
T  25962851 ggtaaaaccgaaaatgacctatattacagggggtaaaacactattaaccct 25962801  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 6897121 - 6897160
Alignment:
Q  80 aaatgacctatattacag--aggtaaaacactactaaccc 117  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  6897121 aaatgacctatattacagggaggtaaaacactactaaccc 6897160  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 7243308 - 7243355
Alignment:
Q  76 ccgaaaatgacctatattacagaggt--aaaacactactaaccctaaa 121  Q
    ||||||||||||||||||||||||||  ||||||| | ||||||||||    
T  7243308 ccgaaaatgacctatattacagaggtgaaaaacaccattaaccctaaa 7243355  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 12068082 - 12068142
Alignment:
Q  59 ttttatagaaggtaaacccgaaaatgacctatattacagaggtaaaacactactaacccta 119  Q
    ||||| |||||  ||| |||||||||||||||||||||| | |||||||||| | ||||||    
T  12068082 ttttacagaagacaaatccgaaaatgacctatattacagggctaaaacactatttacccta 12068142  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 29691011 - 29690959
Alignment:
Q  69 ggtaaacccgaaaatgacctatattac-agaggtaaaacactactaaccctaa 120  Q
    |||||| |||||||||||||||||||| || ||| |||||||| |||||||||    
T  29691011 ggtaaaaccgaaaatgacctatattacaaggggtgaaacactattaaccctaa 29690959  T

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Target: scaffold1462 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1462
Description:

Target: scaffold1462; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 414 - 460
Alignment:
Q  78 gaaaatgacctatattacagaggtaaaacactact-aaccctaaatt 123  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||    
T  414 gaaaatgacctatattacaggggtaaaacactattaaaccctaaatt 460  T

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Target: scaffold0258 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 18684 - 18642
Alignment:
Q  77 cgaaaatgacctatattaca-gaggtaaaacactactaaccct 118  Q
    |||||||||||||||||||| |||||||||||||| |||||||    
T  18684 cgaaaatgacctatattacaggaggtaaaacactattaaccct 18642  T

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Target: scaffold0258; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 18937 - 18974
Alignment:
Q  80 aaatgacctatattacagaggtaaaacactactaaccc 117  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  18937 aaatgacctatattacagtggtaaaacactattaaccc 18974  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 13982 - 13944
Alignment:
Q  80 aaatgacctatattacagaggtaaaacactactaaccct 118  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  13982 aaatgacctatattatagaggtaaaacactattaaccct 13944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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