View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10305_low_15 (Length: 314)
Name: NF10305_low_15
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 41232789 - 41232502
Alignment:
| Q |
7 |
aaaactacctgatagcaagcaccgcagccagtgccattcttccatagcttagacacgccagcaacattgccatcattcactgtcctttcatattctccaa |
106 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41232789 |
aaaactacctgatagcatgcaccgcagccagtgccattcttccatagcttagacacaccagcaacattgccatcattcactgtccttccatattctccaa |
41232690 |
T |
|
| Q |
107 |
agccacaagctccccctaaagtatatatttcaattcataaatcatgttatatttgttactttcattttcaatgtagttttagttaatctttttaaaatgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41232689 |
agccacaagctccccctaaagtatatatttcaattcataaatcatgttatatttgttactttcattttcaatgtagttttagttaatctttttaaaatgt |
41232590 |
T |
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| Q |
207 |
acccttgaattagtatcgcatgcatcacttcaaaattattattttttcagtttgcatttatgacaatgataacacaccaacaatcttg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41232589 |
acccttgaattagtatcgcatgcatcacttcaaaattattattttttcagtttgcatttatgacaatggtaacacaccaacaatcttg |
41232502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 4264193 - 4264303
Alignment:
| Q |
16 |
tgatagcaagcaccgcagccagtgccattcttccatagcttagacacgccagcaacattgccatcattcactgtcctttcatattctccaaagccacaag |
115 |
Q |
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|||||||| ||||| || |||| ||||||||||||||| ||||||||| || |||||||||||||| |||||| | | || || ||| ||||||||| |
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| T |
4264193 |
tgatagcatgcaccacaaccagatccattcttccatagccaagacacgcctgcgacattgccatcatttactgtctgtccgtaatcaccatagccacaag |
4264292 |
T |
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| Q |
116 |
ctccccctaaa |
126 |
Q |
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| T |
4264293 |
ctccctctaaa |
4264303 |
T |
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