View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10305_low_17 (Length: 303)

Name: NF10305_low_17
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10305_low_17
NF10305_low_17
[»] chr1 (3 HSPs)
chr1 (120-261)||(29500326-29500464)
chr1 (156-216)||(31123291-31123351)
chr1 (16-53)||(29500222-29500259)
[»] chr8 (2 HSPs)
chr8 (123-262)||(40499433-40499572)
chr8 (156-209)||(39037402-39037456)
[»] chr6 (1 HSPs)
chr6 (120-261)||(14526792-14526933)
[»] chr7 (2 HSPs)
chr7 (181-263)||(12489525-12489606)
chr7 (155-224)||(43016466-43016535)
[»] chr3 (1 HSPs)
chr3 (156-262)||(35495300-35495405)
[»] chr2 (4 HSPs)
chr2 (260-303)||(37659018-37659061)
chr2 (156-262)||(11361771-11361876)
chr2 (180-263)||(17641379-17641461)
chr2 (201-261)||(5568385-5568446)
[»] chr4 (1 HSPs)
chr4 (156-224)||(23112156-23112224)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 120 - 261
Target Start/End: Original strand, 29500326 - 29500464
Alignment:
Q  120 acggatctgcgaacggagaagaggaagagattgtgaaaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtg 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||   |||||||     
T  29500326 acggatctgcgaacagagaagaggaagagattgtgaaaactaccaaactatccctaacacgtgaaattaccaaactacccctgccacat---cagtggta 29500422  T
Q  220 caaagaggtgtatgaaaaagagtggtctatgtgtctttttcc 261  Q
    ||||||| |||||| ||||||||||||||||| |||||||||    
T  29500423 caaagagatgtatggaaaagagtggtctatgtatctttttcc 29500464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 31123351 - 31123291
Alignment:
Q  156 aaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtg 216  Q
    |||||||||||||| |||||  | ||||||||||||||||||| |||||||||||||||||    
T  31123351 aaactaccaaactacccctattgtgtgaaattaccaaactacctctgccacatcagcagtg 31123291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 29500222 - 29500259
Alignment:
Q  16 gaaggagacatggggtgagttgagaacatgtgttggtt 53  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29500222 gaaggagacatggggtgagttgagaacatgtgttggtt 29500259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 123 - 262
Target Start/End: Complemental strand, 40499572 - 40499433
Alignment:
Q  123 gatctgcgaacggagaagaggaagagattgtgaaaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtgcaa 222  Q
    |||||| ||||  ||||||| |||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  40499572 gatctgtgaacaaagaagagaaagagattgtaaaaactaccaaactatccctatcgcgtgaaattatcaaactacccctgccacatcagcagtggtgcaa 40499473  T
Q  223 agaggtgtatgaaaaagagtggtctatgtgtctttttcct 262  Q
    || || ||||  ||||||||||||||||| ||||||||||    
T  40499472 aggggcgtatagaaaagagtggtctatgtatctttttcct 40499433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 39037402 - 39037456
Alignment:
Q  156 aaactaccaaactatccct-agcgcgtgaaattaccaaactacccctgccacatc 209  Q
    |||||||||||||| |||| | ||||||||||||||||||||||| |||||||||    
T  39037402 aaactaccaaactaccccttatcgcgtgaaattaccaaactacccttgccacatc 39037456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 120 - 261
Target Start/End: Original strand, 14526792 - 14526933
Alignment:
Q  120 acggatctgcgaacggagaagaggaagagattgtgaaaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtg 219  Q
    ||||||||| |||| |||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||  |||||| || ||||     
T  14526792 acggatctgtgaacagagaagaggaagagattgcgaaaactatcaaactatcactagcgcgtgaaattaccaaactacccctgtaacatcaacactggta 14526891  T
Q  220 caaagaggtgtatgaaaaagagtggtctatgtgtctttttcc 261  Q
    ||||| |||||||  ||||||||||||||||| |||||||||    
T  14526892 caaaggggtgtatagaaaagagtggtctatgtatctttttcc 14526933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 12489606 - 12489525
Alignment:
Q  181 tgaaattaccaaactacccctgccacatcagcagtggtgcaaagaggtgtatgaaaaagagtggtctatgtgtctttttcctt 263  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |  || |||||||||||| |||||||||||    
T  12489606 tgaaattaccaaactacccctgccacatcagcagtggtacaaaggggtgtat-attaaaagtggtctatgtatctttttcctt 12489525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 43016535 - 43016466
Alignment:
Q  155 aaaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtgcaaag 224  Q
    ||||||||||||||| |||||||   |||||||| ||| ||||||||||||||||||||||||| |||||    
T  43016535 aaaactaccaaactacccctagcatatgaaattagcaatctacccctgccacatcagcagtggtacaaag 43016466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 35495405 - 35495300
Alignment:
Q  156 aaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtgcaaagaggtgtatgaaaaagagtggtctatgtgtct 255  Q
    |||||||||||||| | |||  || ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |   |||||||||| ||| |||    
T  35495405 aaactaccaaactacctctattgcatgaaattaccaaactacccctaccacatcagcagtggtgcaaaggggtgtat-attgagagtggtctctgtatct 35495307  T
Q  256 ttttcct 262  Q
    |||||||    
T  35495306 ttttcct 35495300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 37659061 - 37659018
Alignment:
Q  260 ccttttcttatagaaccaaacctcttacatttacatttgccttt 303  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  37659061 ccttttcttataggaccaaacctcttacatttacatttgccttt 37659018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 11361771 - 11361876
Alignment:
Q  156 aaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtgcaaagaggtgtatgaaaaagagtggtctatgtgtct 255  Q
    |||||| ||||||| || ||  |||||||| |||||||||  |||||||||||||||||||||  |||| |||| || |  || |||||||||||| |||    
T  11361771 aaactatcaaactacccatattgcgtgaaactaccaaactgtccctgccacatcagcagtggtataaaggggtggat-attaaaagtggtctatgtatct 11361869  T
Q  256 ttttcct 262  Q
    |||||||    
T  11361870 ttttcct 11361876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 17641461 - 17641379
Alignment:
Q  180 gtgaaattaccaaactacccctgccacatcagcagtggtgcaaagaggtgtatgaaaaagagtggtctatgtgtctttttcctt 263  Q
    |||||||||| ||| | ||| | |||||| |  |||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  17641461 gtgaaattactaaaatgcccataccacattattagtggtgcaaaggggtgtat-agaaagagtggtctatgtatctttttcctt 17641379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 5568385 - 5568446
Alignment:
Q  201 tgccacatcagcagtggtgcaaagaggtgtatgaaaa-agagtggtctatgtgtctttttcc 261  Q
    |||||||||||||||||| ||||| ||||||| |||| ||||||||  |||| |||||||||    
T  5568385 tgccacatcagcagtggtacaaaggggtgtattaaaagagagtggtacatgtatctttttcc 5568446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 23112224 - 23112156
Alignment:
Q  156 aaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtgcaaag 224  Q
    |||||||||||||| | |||  ||||||||||| ||||| |||||| |||||||||||||||| |||||    
T  23112224 aaactaccaaactacctctattgcgtgaaattatcaaaccacccctaccacatcagcagtggtacaaag 23112156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University