View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10305_low_18 (Length: 302)

Name: NF10305_low_18

Description: NF10305

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10305_low_18

[»] chr6 (2 HSPs)

[»] chr8 (1 HSPs)

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 75; E-Value: 1e-34

Query Start/End: Original strand, 207 - 281

Target Start/End: Complemental strand, 34196730 - 34196656

Alignment:

Q	207	gcacatacccaaatccaacgtcttgataataaggcacattagaaagcaaagtttcatcaatatcaaacacccaag	281	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34196730	gcacatacccaaatccaacgtcttgataataaggcacattagaaagcaaagtttcatcaatatcaaacacccaag	34196656	T

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Target: chr6; HSP #2

Raw Score: 65; E-Value: 1e-28

Query Start/End: Original strand, 73 - 149

Target Start/End: Complemental strand, 34196864 - 34196788

Alignment:

Q	73	agagataccgatgaatgtttgtgattcatagaatataatcaaagtttaaaaagaaaaagtgattacttgaaatatat	149	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	34196864	agagataccgatgaatgtttgtgcttcatagaatataatcaaagtttaaaaagaaaatgtgattaattgaaatatat	34196788	T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 232 - 281

Target Start/End: Complemental strand, 18114105 - 18114056

Alignment:

Q	232	ataataaggcacattagaaagcaaagtttcatcaatatcaaacacccaag	281	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	18114105	ataataaggcaaattagacaacaaagtctcatcaatatcaaaaacccaag	18114056	T

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