View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10305_low_22 (Length: 250)
Name: NF10305_low_22
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 47967876 - 47968047
Alignment:
| Q |
14 |
agggaggagctacagaaactggattttgggtcggataagacaaacttcttcacagacaaacttctccacagaaatttgaaactaaatttgtaaaaacagc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47967876 |
agggaggagctacagaaactggattttgggtcggataagacaaacttcttcacagacaaacttctccacagaaatctgaaactaaatttgtaaaaacagc |
47967975 |
T |
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| Q |
114 |
aaatacaattaagggaaccatgtacatgtgaccattacgtatttaaataaacattgtcataaaactaaccat |
185 |
Q |
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| T |
47967976 |
aaatacaattaagggaaccatgtacatgtgaccattacgtatttaaataaacattgtcataaaactaaccat |
47968047 |
T |
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Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 37338231 - 37338096
Alignment:
| Q |
18 |
aggagctacagaaactggattttgggtcggataagacaaacttcttcacagacaaacttctccacagaaatttgaaactaaatttgtaaaaacagcaaat |
117 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |
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| T |
37338231 |
aggagctacagaaactggactttgggtcagataagacaaacttcttcgcagacaaacttttccacagaaatctgaaactaaatttataaaaacagcaaat |
37338132 |
T |
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| Q |
118 |
acaattaagggaaccatgtacatgtgaccattacgt |
153 |
Q |
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| T |
37338131 |
acaattaagggaaccatgtacatgtgaccattacgt |
37338096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 153
Target Start/End: Original strand, 11299942 - 11300076
Alignment:
| Q |
14 |
agggaggagctacagaaactggattttgggtcggataagacaaacttcttcacagacaaacttctccacagaaatttgaaactaaatttgtaaaaacagc |
113 |
Q |
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| T |
11299942 |
agggaggagctacaaaaactggattttgggtc-----agacaaacttcttcaaagacaaacttctccacagaaatctgaaactaaatttgtaaaaacagc |
11300036 |
T |
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| Q |
114 |
aaatacaattaagggaaccatgtacatgtgaccattacgt |
153 |
Q |
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| T |
11300037 |
aaatacaattaaggaaaccatgtacacgtgaccattacgt |
11300076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 15297012 - 15296926
Alignment:
| Q |
67 |
agacaaacttctccacagaaatttgaaactaaatttgtaaaaacagcaaatacaattaagggaaccatgtacatgtgaccattacgt |
153 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15297012 |
agacaaacttctccacagaaatctgaatctaaatttgtaaaaacagcaaatacaattaagggaaccatgtacatgtgaccattacgt |
15296926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 15297045 - 15297001
Alignment:
| Q |
18 |
aggagctacagaaactggattttgggtcggataagacaaacttct |
62 |
Q |
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| T |
15297045 |
aggagctacagaaactggactttgggtcagataagacaaacttct |
15297001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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