View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10305_low_23 (Length: 250)
Name: NF10305_low_23
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 10213247 - 10213029
Alignment:
| Q |
20 |
aaggagaactaacacaagccttttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaagg-atttatgaggccgtttcttaaaatttcta |
118 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
10213247 |
aaggagaactaacacaagccttttgtcgccgtgcttctgtcaaaggttgcatttatttaagttttaaagggatttaggcggccgtttcttaaaatttcta |
10213148 |
T |
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| Q |
119 |
aataccttaatttcattctcttgaaatattgcaaattgttgttttgtcgaacttatatgcttatttacgtcttaaacttttgcgaatccggttcgctgaa |
218 |
Q |
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|||| || |||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||| |||| ||||| |||||| ||| |
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| T |
10213147 |
aatatctaaatttcattctctttaaatattgcaaattgttgttttgttaaacttatatgtttatttacatcttaaaattttctgaatcaggttcgtcgaa |
10213048 |
T |
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| Q |
219 |
tgctggttatttctctgct |
237 |
Q |
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||| |||||||||||||| |
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| T |
10213047 |
tgcctgttatttctctgct |
10213029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 12105414 - 12105294
Alignment:
| Q |
20 |
aaggagaactaacacaagccttttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaaggatttatgaggccgtttcttaaaatttctaa |
119 |
Q |
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|||||||||||| | ||||||||||| || || || |||||| |||| |||||||| || ||||||||||||||||||||| |||||||||||||||||| |
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| T |
12105414 |
aaggagaactaaaagaagccttttgtcgttgtactgctgtcataggtcgcatttatgtatgttttaaaggatttatgaggctgtttcttaaaatttctaa |
12105315 |
T |
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| Q |
120 |
ataccttaatttcattctctt |
140 |
Q |
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| T |
12105314 |
atatcttaatttcattctctt |
12105294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 9677320 - 9677191
Alignment:
| Q |
20 |
aaggagaactaacacaagccttttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaaggatttatgaggccgtttcttaaaatttctaa |
119 |
Q |
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||||||||| ||||||||| || || ||| | || ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
9677320 |
aaggagaaccaacacaagctttctgccgtcatactgctgtcaaaggtcacatttatgtaagttttaaaggatttatgaggctgtttcttaaaatttataa |
9677221 |
T |
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| Q |
120 |
ataccttaatttcattctcttgaaatattg |
149 |
Q |
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|||||||||||||| |||||| |||||||| |
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| T |
9677220 |
ataccttaatttcactctctttaaatattg |
9677191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 9675660 - 9675527
Alignment:
| Q |
96 |
gaggccgtttcttaaaatttctaaataccttaatttcattctcttgaaatattgcaaattgttgttttgtcgaacttatatgcttatttacgtcttaaac |
195 |
Q |
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| T |
9675660 |
gaggccttttctttaaatttccaaataccttaatttcattctcttttaatattgcatattgttg--------aacttatatgcttatttacatcttaaac |
9675569 |
T |
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| Q |
196 |
ttttgcgaatccggttcgctgaatgctggttatttctctgct |
237 |
Q |
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| T |
9675568 |
ttttgtgaatcaggttcgacgaatgccggttatatctctgct |
9675527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 10105150 - 10105245
Alignment:
| Q |
142 |
aaatattgcaaattgttgttttgtcgaacttatatgcttatttacgtcttaaacttttgcgaatccggttcgctgaatgctggttatttctctgct |
237 |
Q |
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|||||||||||||||||||||||| |||| | ||||||||| ||| ||||||| ||||| ||||| ||||||| ||||| |||||||||||||| |
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| T |
10105150 |
aaatattgcaaattgttgttttgttgaacatgtatgcttatgtacatcttaaaattttgtgaatcaggttcgccaaatgcctgttatttctctgct |
10105245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 9683994 - 9683918
Alignment:
| Q |
20 |
aaggagaactaacacaagccttttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaaggatttatga |
97 |
Q |
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| T |
9683994 |
aaggggaactaccacaagctttttgtcgtcgtgctgctgtcaaaggttgcatttatgtaag-tttaaaggatttatga |
9683918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 10211087 - 10211009
Alignment:
| Q |
20 |
aaggagaactaacacaagccttttgttgtcgtgcttctgtcaaaggttgcatttatttaagttttaaaggatttatgag |
98 |
Q |
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||||| ||||| |||||| |||||| |||||||| || ||||||||||||||||| ||||||||| |||||||||||| |
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| T |
10211087 |
aaggaaaactacgacaagctttttgtcgtcgtgctgctatcaaaggttgcatttatgtaagttttataggatttatgag |
10211009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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