View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10305_low_25 (Length: 248)

Name: NF10305_low_25
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10305_low_25
NF10305_low_25
[»] chr4 (2 HSPs)
chr4 (22-234)||(44933833-44934045)
chr4 (22-234)||(46604526-46604738)
[»] chr3 (2 HSPs)
chr3 (22-234)||(38825596-38825808)
chr3 (22-234)||(11525062-11525274)
[»] chr1 (1 HSPs)
chr1 (22-234)||(17881516-17881728)
[»] chr7 (2 HSPs)
chr7 (50-136)||(26083091-26083177)
chr7 (50-136)||(26106878-26106964)
[»] chr6 (3 HSPs)
chr6 (50-136)||(4502475-4502561)
chr6 (50-136)||(15826027-15826113)
chr6 (50-111)||(34312021-34312082)
[»] chr5 (2 HSPs)
chr5 (50-136)||(548680-548766)
chr5 (50-136)||(30279092-30279178)
[»] scaffold1049 (1 HSPs)
scaffold1049 (50-111)||(232-293)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 44933833 - 44934045
Alignment:
Q  22 gacctatacattcctatcagatctccttcttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  44933833 gacctatacattcctatcagatctccttcttcagtttattgtgacaatgcatcagcgatttatcttgctcataatcctacctttcatgagtgtataaagc 44933932  T
Q  122 atattgagattgattaccatgtgattagagaaaagattcaaaagggcaccattcacctcttaccagttccatcatcaccccaacttgttgatgtatttac 221  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||    
T  44933933 atattgagattgattaccatgtaattagagaaaagattcaaaagggcaccattcacctcttatcagttccatcatcacctcaacttgctgatgtatttac 44934032  T
Q  222 taaaccccttcat 234  Q
    |||||||||||||    
T  44934033 taaaccccttcat 44934045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 46604526 - 46604738
Alignment:
Q  22 gacctatacattcctatcagatctccttcttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagc 121  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||| |    
T  46604526 gacctatacattcctatcaaatctccatcttcagtttattgtgacaatgcatcagcaatttatcttgctcataaccctacttttcatgagcgtacaaaac 46604625  T
Q  122 atattgagattgattaccatgtgattagagaaaagattcaaaagggcaccattcacctcttaccagttccatcatcaccccaacttgttgatgtatttac 221  Q
    |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||    
T  46604626 atattgagatagattgccatgtaattagagaaaagattcaaaagggcaccattcacctattaccagttccatcatcatctcaacttgctgatgtatttac 46604725  T
Q  222 taaaccccttcat 234  Q
    |||||| ||||||    
T  46604726 taaaccgcttcat 46604738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 38825596 - 38825808
Alignment:
Q  22 gacctatacattcctatcagatctccttcttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagc 121  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||| |    
T  38825596 gacctatacattcctatcaaatctccatcttcagtttattgtgacaatgcatcagcaatttatcttgctcataaccctacttttcatgagcgtacaaaac 38825695  T
Q  122 atattgagattgattaccatgtgattagagaaaagattcaaaagggcaccattcacctcttaccagttccatcatcaccccaacttgttgatgtatttac 221  Q
    |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||    
T  38825696 atattgagatagattgccatgtaattagagaaaagattcaaaagggcaccattcacctattaccagttccatcatcatctcaacttgctgatgtatttac 38825795  T
Q  222 taaaccccttcat 234  Q
    |||||| ||||||    
T  38825796 taaaccgcttcat 38825808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 11525062 - 11525274
Alignment:
Q  22 gacctatacattcctatcagatctccttcttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagc 121  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||| || ||| |    
T  11525062 gacctatacattcctttcaaatctccgtcttcagtttattgtgataatgcatcaacaatttatcttgctcataaccctacttttcatgagcgtacaaaac 11525161  T
Q  122 atattgagattgattaccatgtgattagagaaaagattcaaaagggcaccattcacctcttaccagttccatcatcaccccaacttgttgatgtatttac 221  Q
    | ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||||||| ||||||||||||    
T  11525162 acattgagaatgatttccatgtgattagagaaaagattcaaaagggcaccattcaactattaccagttccatcatcatctcaacttgctgatgtatttac 11525261  T
Q  222 taaaccccttcat 234  Q
     ||||| ||||||    
T  11525262 caaaccgcttcat 11525274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 17881728 - 17881516
Alignment:
Q  22 gacctatacattcctatcagatctccttcttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagc 121  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||| |    
T  17881728 gacctatacattcctatcaaatctccatcttcagtttattgtgacaatgcatcagcaatttatcttgctcataaccctacttttcatgagcgtacaaaac 17881629  T
Q  122 atattgagattgattaccatgtgattagagaaaagattcaaaagggcaccattcacctcttaccagttccatcatcaccccaacttgttgatgtatttac 221  Q
    |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||    
T  17881628 atattgagatagattgccatgtaattagagaaaagattcaaaagggcaccattcacctattaccagttccatcatcatctcaacttgctgatgtatttac 17881529  T
Q  222 taaaccccttcat 234  Q
    |||||| ||||||    
T  17881528 taaaccgcttcat 17881516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 26083177 - 26083091
Alignment:
Q  50 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 136  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  26083177 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 26083091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 26106964 - 26106878
Alignment:
Q  50 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 136  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  26106964 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 26106878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 4502475 - 4502561
Alignment:
Q  50 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 136  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  4502475 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 4502561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 15826027 - 15826113
Alignment:
Q  50 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 136  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  15826027 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 15826113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 34312021 - 34312082
Alignment:
Q  50 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgag 111  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||    
T  34312021 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgag 34312082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 548766 - 548680
Alignment:
Q  50 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 136  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  548766 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 548680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 30279178 - 30279092
Alignment:
Q  50 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 136  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  30279178 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 30279092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1049 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 293 - 232
Alignment:
Q  50 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgag 111  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||    
T  293 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgag 232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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