View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10305_low_3 (Length: 588)
Name: NF10305_low_3
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 30247805 - 30247468
Alignment:
| Q |
16 |
atattatactctatctaaacactttagtgattataggccttttcatgcaagactaaattgggttcaacatttttccccaagactataatgaataattact |
115 |
Q |
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| T |
30247805 |
atattatactctatataaacactttagtgattataggccttttcctgcaagactaaattgggttcaacatttttccccaagactataatgaataattact |
30247706 |
T |
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| Q |
116 |
ctc---------ctactgtctaaaaacataatgaaaaactttttgatggaaaagcaatgccttaaagcttcaggtagtatgtatgtcaagagcaaacaac |
206 |
Q |
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| T |
30247705 |
ctcaatttaaccctactgtctaaaaatgtaatgaaaaactttttgatggaaaagcaatgccttaaagcttcaggtagtatgtatgtcaagagcaaacaac |
30247606 |
T |
|
| Q |
207 |
tagcagtaacagataatattttctcctgtggaatgaaattgaccagcctatacaattacaaaagacaaaggatcattacaaacaattgctctgcacagac |
306 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30247605 |
tagcagtaacagataatattttctccggtggaatgaaattgaccagcctatacaattacaaaagacaaaggatcattacaaacaattgctctgcacagac |
30247506 |
T |
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| Q |
307 |
ataaatagttaaaaagataaatcattgttcattttgta |
344 |
Q |
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| T |
30247505 |
ataaatagttaaaaagataaatcattgttcattttgta |
30247468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 393 - 578
Target Start/End: Complemental strand, 30247419 - 30247234
Alignment:
| Q |
393 |
tacctttaaatctatactatgcttcacgcttttttgtactgttaaaaaagatatccctcagagtcatatccttctgtaaactctttttaacataaggtgc |
492 |
Q |
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| T |
30247419 |
tacctttaaatctttactatgcttcacgcttttttgtactgttaaaaaagatatccctcagagtcatatccttctgtaaactctttttaacataaggtgc |
30247320 |
T |
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| Q |
493 |
tcctgttccttcaaccttagttcttagttttattatcagagacttggatgcatgtgatgtaagcaaattctttaattaatcctatg |
578 |
Q |
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| T |
30247319 |
tcctgttccttcaaccttagttcttagttttattatcagagacttggatgcatgtgatgtaagcaaattctttaattaatcctatg |
30247234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 130 - 344
Target Start/End: Complemental strand, 30783925 - 30783711
Alignment:
| Q |
130 |
aaacataatgaaaaactttttgatggaaaagcaatgccttaaagcttcaggtagtatgtatgtcaagagcaaacaa-ctagcagtaacagataatatttt |
228 |
Q |
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|||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |
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| T |
30783925 |
aaacgtaataaaaaactttt-gatggaaaagcaataccttaaagcttcaggtagtatgtatgtcaagagcaaacaaactagctgcaacagataatatttt |
30783827 |
T |
|
| Q |
229 |
ctcctgtggaatgaaattgaccagcctatacaattacaaaagacaaaggatcattacaaacaattgctctgcacagacataaatagttaaaaagataaat |
328 |
Q |
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| T |
30783826 |
ctcctgtggaataaaattgaccagcctatacatttacaagagacaaaggatcattacaaacgatttctctgcacagacataaatacttaaaaagatgaac |
30783727 |
T |
|
| Q |
329 |
cattgttcattttgta |
344 |
Q |
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||||| | |||||||| |
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| T |
30783726 |
cattgctaattttgta |
30783711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 393 - 578
Target Start/End: Complemental strand, 30783667 - 30783482
Alignment:
| Q |
393 |
tacctttaaatctatactatgcttcacgcttttttgtactgttaaaaaagatatccctcagagtcatatccttctgtaaactctttttaacataaggtgc |
492 |
Q |
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| T |
30783667 |
tacctttaaatatatactatgcttcacgcttttttatactgttacaaaagatattcctcagattcatatcattctgtaaactctctttaatataaggtgc |
30783568 |
T |
|
| Q |
493 |
tcctgttccttcaaccttagttcttagttttattatcagagacttggatgcatgtgatgtaagcaaattctttaattaatcctatg |
578 |
Q |
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| T |
30783567 |
tcttgttccttgaaccttagctcttagttttatcatcagagacttggatgcatgtgatgtaagcaaattctttaattaatcctatg |
30783482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 30217216 - 30217157
Alignment:
| Q |
208 |
agcagtaacagataatattttctcctgtggaatgaaattgaccagc-ctatacaattacaa |
267 |
Q |
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||||||| |||||||||||||||| || |||||| |||||| |||| |||||||||||||| |
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| T |
30217216 |
agcagtatcagataatattttctcttgaggaatgcaattga-cagctctatacaattacaa |
30217157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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