View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10305_low_34 (Length: 219)
Name: NF10305_low_34
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_low_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 382024 - 382212
Alignment:
| Q |
1 |
gttactgggaaagtaatagaggtttatcaaccaagtcatgaaaaggttcaaaagatatgacatgacaaataagcataatatagtgctaactgctaagcat |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
382024 |
gttactgggaaagtagtagaggtttatcaaccaagtcatgaaaaggttcaaaagatatgaca-----aataagcataatatagtgct-------aagcat |
382111 |
T |
|
| Q |
101 |
gttttttccatcctttttggagaaaacaaacatgcaccaatttagaaactctaatttcaatcccatggaaacaatagaaatattatagtacattacctat |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
382112 |
gttttttccatcctttgtggagaaaacaaacatgcaccaatttagaaactctaatttcaatcccatggaaacaatagagatattatagtacattacctat |
382211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University