View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10305_low_35 (Length: 219)
Name: NF10305_low_35
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_low_35 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 13387742 - 13387538
Alignment:
| Q |
1 |
ttatcaataacttgtcattacttgagtatattaattccaagtgcggcctttttaatgttgcagataagttatttcattattctttgcagaatggtatagg |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13387742 |
ttatcaataacttgtcatttcttcagtatattaattccaagtgcggcctttttaatgttgcagataagttatttcattattctttgcagaatggtatagg |
13387643 |
T |
|
| Q |
101 |
acctaatacttatatatcttgtggtattagagataaagttggcagaggtattatgaatgacatgatgtatttctctatccttattaacacaagacatgaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
13387642 |
acctaagacttatatatcttgtgggattagtgataatgttggcagaggtattatgaatgacatggtatatttctctatccttattaacacaagacatgaa |
13387543 |
T |
|
| Q |
201 |
aaata |
205 |
Q |
| |
|
||||| |
|
|
| T |
13387542 |
aaata |
13387538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 36998786 - 36998655
Alignment:
| Q |
18 |
ttacttgagtatattaattccaagtgcggcctttttaatgttgcagataagttatttcattattctttgcagaatggtataggacctaatacttatatat |
117 |
Q |
| |
|
|||||| ||||||| | |||||||| |||||| |||||||||||| ||| || |||||| || |||||||||| | ||||||| || | ||||||| |
|
|
| T |
36998786 |
ttacttcagtatatacactccaagtggggccttcttaatgttgcagctaaattgcctcattactccttgcagaatgatgtaggacccaagatatatatat |
36998687 |
T |
|
| Q |
118 |
cttgtggtattagagataaagttggcagaggt |
149 |
Q |
| |
|
||| ||| ||||| || || ||||||||||| |
|
|
| T |
36998686 |
cttatgggattagtgacgaacttggcagaggt |
36998655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University