View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10305_low_36 (Length: 206)
Name: NF10305_low_36
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_low_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 16640176 - 16639997
Alignment:
| Q |
8 |
agaagcagagaaaaaccatgaacatgactaaattaatgtccaacaaaacaacctagtaatactgcaattctaaccttctagcacacaaagtacnnnnnnn |
107 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16640176 |
agaagaagagaaaaaccacgaacatgactaaattaatgtccaaaaaaacaacctagtaatactgcaattctaaccttctagcacacaaagtacaaaaaaa |
16640077 |
T |
|
| Q |
108 |
cttcctcttgatcttaaaacacataggcaaaaaacaaaacctccattgcatttcaacatccatagcttcaactttgccac |
187 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16640076 |
cttcctcttaatcttaaaacacataggcaaaaaacaaaacctccattgcatctcaacatccatagcttcaactttgccac |
16639997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University