View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10305_low_5 (Length: 476)
Name: NF10305_low_5
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_low_5 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 251 - 465
Target Start/End: Complemental strand, 16344454 - 16344240
Alignment:
| Q |
251 |
cttccactgtactcataatagcaagaaagattggtccaagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcat |
350 |
Q |
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| T |
16344454 |
cttccactgtactcataatagcaagaaagattggtccaagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcat |
16344355 |
T |
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| Q |
351 |
aacaaaatgccaacatatgacaaccttcagcgcaaagggctctctttcccatcaatgtgcagtttatgtggcatgcagtctgaaacctcgcatcatttat |
450 |
Q |
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| T |
16344354 |
aacaaaatgccaacatatgacaaccttcagcgcaaagggctctctttcccatcaatgtgcagtttatgtggcatgcagtctgaaacctcgcatcatttat |
16344255 |
T |
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| Q |
451 |
tccttcaaagttctt |
465 |
Q |
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| T |
16344254 |
tccttcaatgttctt |
16344240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 16344663 - 16344455
Alignment:
| Q |
1 |
gatgattggtgtggatcccctttggttgacttgcttcatattccccataatctgcacaataatctgcagtccaaagtgaatgatttcatccaattctcaa |
100 |
Q |
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| T |
16344663 |
gatgattggtgtggatcccctttggttgacttgcttcatatttcccataatctgcacaat---ctgcagtccaaagtgaatgatttcatccaattctcaa |
16344567 |
T |
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| Q |
101 |
tggcatgttccaatggagttgcagctagcctatccatccttaattcaccatattaataaaatcactcactattccttggaggcataaagctgataagttc |
200 |
Q |
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| T |
16344566 |
tggcatgttccaatggagttgcagctagcctatccatccttaatgcaccatattaataaaat----cactattccttggaggcataaagctgataagttc |
16344471 |
T |
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| Q |
201 |
atatggaaagacaccc |
216 |
Q |
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| T |
16344470 |
atatggaaagacaccc |
16344455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 288 - 409
Target Start/End: Original strand, 29910 - 30031
Alignment:
| Q |
288 |
aagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcataacaaaatgccaacatatgacaaccttcagcgcaaag |
387 |
Q |
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| T |
29910 |
aagatcatttggaactcaacaattcccccatctaaatcttttcatgtttggagaatgattcacaacaagatgccaactgatgaaaatcttcagctcagag |
30009 |
T |
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| Q |
388 |
ggctctctttcccatcaatgtg |
409 |
Q |
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| T |
30010 |
gtttatctttcccatcaatgtg |
30031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 411
Target Start/End: Complemental strand, 12043445 - 12043322
Alignment:
| Q |
288 |
aagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcataacaaaatgccaacatatgacaaccttcagcgcaaag |
387 |
Q |
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|||||||| ||||||||| |||||| || ||||||||||||||| | ||||||||||| ||| | || || ||||| |||| ||||| || | || || |
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| T |
12043445 |
aagataatatggaactcaacaattcttccatcaaaatcttttcatatgtggagaatgatccatgagaagattccaaccgatgaaaacctgcatctcagag |
12043346 |
T |
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| Q |
388 |
ggctctctttcccatcaatgtgca |
411 |
Q |
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| T |
12043345 |
gcttatctttcccatcaatgtgca |
12043322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 12043728 - 12043624
Alignment:
| Q |
2 |
atgattggtgtggatcccctttggttgacttgcttcatattccccataatctgcacaataatctgcagtccaaagtgaatgatttcatc--caattctca |
99 |
Q |
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| T |
12043728 |
atgattggtgtggaacccccttg-ttgatttgtttcatattccccataacctgcatcataatcttctctctacagtgaatgactacatcatcaattctca |
12043630 |
T |
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| Q |
100 |
atggca |
105 |
Q |
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|||||| |
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| T |
12043629 |
atggca |
12043624 |
T |
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