View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10305_low_8 (Length: 448)
Name: NF10305_low_8
Description: NF10305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10305_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 38823837 - 38823537
Alignment:
| Q |
16 |
agttcttctgttaccggatgacttgggagatctcttagagtcaatgtatttctaacactactgatagatccaaatagagtatcaaatgtttcaacctgtc |
115 |
Q |
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| T |
38823837 |
agttcttctgttaccggatgacttgggagatctcttagagtcaatgtatttcttgt-ctactgatagatccaaatagattatcaaatgtttcaacctgtc |
38823739 |
T |
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| Q |
116 |
aatccattgctttaaatcatgatgtgtggcatcactaacaaggaattcaaaattaagctatagctgtgttacacattatcacaatcttttagctatttta |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38823738 |
aatccactgctttaaatcatgatgtgtggcatcactaacaaggaattcaaaattaagctatagctgtgttacacattatcacaatcttttagctatttta |
38823639 |
T |
|
| Q |
216 |
agtacaccgagaatactttagacttagcaaagcacaagtgtagagttcaagttctgactataaaaggtttgaatcggtgtattttcttatgttgttgtgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38823638 |
agtacaccgagaatactttagacttagcaaagcacaagtgtagagttcaagttctgactataaaaggtttgaatcggtgtattttcttatgttgttgtgt |
38823539 |
T |
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| Q |
316 |
tt |
317 |
Q |
| |
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|| |
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| T |
38823538 |
tt |
38823537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 371 - 438
Target Start/End: Complemental strand, 38823541 - 38823474
Alignment:
| Q |
371 |
tgtttgcactcaacatctcgagtacaagctttttgttcagtctgtcataaattacactctgtcctttg |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38823541 |
tgtttgcactcaacatctcgagtacaagctttttgttcagtctgtcataaattacactctgtcctttg |
38823474 |
T |
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