View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10306_low_1 (Length: 450)
Name: NF10306_low_1
Description: NF10306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10306_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 5 - 437
Target Start/End: Original strand, 8532301 - 8532734
Alignment:
| Q |
5 |
caggaagcactcagcaatatttacaaatagacagttttgtgacaaaacaaatagatggtttaaagtattcaacatttaaccaaattcaatggaaaactat |
104 |
Q |
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| T |
8532301 |
caggaagcactcagcaatatttacaaatagacaattttgtgacaaaacaaatagatggttgaaagtattcgccatttaaccaaattcaatggaaaactat |
8532400 |
T |
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| Q |
105 |
catttaaaaagttcaactgagttcagagtttagacgtagctagcttgataagatcctttcgaagaattttaccagatggatttttgggtatggaagatat |
204 |
Q |
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| T |
8532401 |
catttaaaaagttcaactgagttcagagtttagacgtagctagcttgataagatccttccgaagaattttaccagatggatttttgggtatggaagatat |
8532500 |
T |
|
| Q |
205 |
aaatgccacttttcgaattcttttgtatggagccacctatatattg-aaaaaataataatttagttttcaatctcatagttgaaatcaaaacccaagcat |
303 |
Q |
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| T |
8532501 |
aaatgccacttttcgaattcttttgtatggagccacctatatattgaaaaaaataataatttagttttcaatctcatagttgaaatcaaaacccaagcat |
8532600 |
T |
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| Q |
304 |
ctaataaagagtgtcattgttgagaaatgtttgaaacaaacaaacctgctctgcaacaaaatccataacttgccttccggacaagttacttcccacattc |
403 |
Q |
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| T |
8532601 |
ctaataaagagtgtcattgttgagaaatgtttcaaacaaacaaacctgctctgcaacaaaatccataacttggcttccggacaagttacttcccacattc |
8532700 |
T |
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| Q |
404 |
cttaccacatatgccattggaacctgcccagcct |
437 |
Q |
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| T |
8532701 |
cttaccacatatgccattggaacctgcccagcct |
8532734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 14749226 - 14749341
Alignment:
| Q |
125 |
gttcagagtttagacgtagctagcttgataagatcctttcgaagaattttaccagatggatttttgggtatggaagatataaatgccacttttcgaattc |
224 |
Q |
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|||||||||||||| ||||| |||||||| |||||| | ||||||||||||||||| |||||||| |||||||||| ||| ||||| ||||||||||||| |
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| T |
14749226 |
gttcagagtttagaagtagcgagcttgatgagatccctccgaagaattttaccagacggatttttaggtatggaaggtatgaatgcaacttttcgaattc |
14749325 |
T |
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| Q |
225 |
ttttgtatggagccac |
240 |
Q |
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| T |
14749326 |
ttttgtacggagccac |
14749341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 340 - 437
Target Start/End: Original strand, 14749650 - 14749747
Alignment:
| Q |
340 |
caaacaaacctgctctgcaacaaaatccataacttgccttccggacaagttacttcccacattccttaccacatatgccattggaacctgcccagcct |
437 |
Q |
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| T |
14749650 |
caaacaaacctggcctgcaacaaattccataacttggctttctgatatgttacttccatccttccttaccacatatgccattggatactgcccagcct |
14749747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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