View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10306_low_2 (Length: 413)

Name: NF10306_low_2
Description: NF10306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10306_low_2
NF10306_low_2
[»] chr3 (19 HSPs)
chr3 (1-396)||(55082486-55082898)
chr3 (214-338)||(50913501-50913626)
chr3 (214-338)||(38038552-38038677)
chr3 (214-396)||(38032212-38032412)
chr3 (214-338)||(38027460-38027585)
chr3 (218-338)||(38035060-38035181)
chr3 (214-338)||(38041945-38042070)
chr3 (70-166)||(38035286-38035382)
chr3 (70-220)||(50913649-50913797)
chr3 (214-319)||(50906835-50906941)
chr3 (77-155)||(38032518-38032596)
chr3 (350-396)||(38027385-38027431)
chr3 (350-396)||(38034985-38035031)
chr3 (350-396)||(38038477-38038523)
chr3 (77-155)||(38038783-38038861)
chr3 (355-396)||(50913426-50913467)
chr3 (79-155)||(38027691-38027767)
chr3 (350-387)||(50906990-50907027)
chr3 (180-220)||(38035208-38035248)
[»] chr8 (2 HSPs)
chr8 (214-396)||(21608187-21608387)
chr8 (77-155)||(21608493-21608571)
[»] chr2 (1 HSPs)
chr2 (351-396)||(3072297-3072342)
[»] chr4 (3 HSPs)
chr4 (241-338)||(27421973-27422070)
chr4 (242-346)||(27446144-27446248)
chr4 (241-341)||(27559278-27559378)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 55082486 - 55082898
Alignment:
Q  1 gtttgattcatcacacggtcatctaagacgacgcaaaaaacaacagatagattcaaaagaatatagttccatt-----------------tcagatttcc 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||                 ||||||||||    
T  55082486 gtttgattcatcacacggtcatctaagacgacgcaaaaaacaacagataaattcaaaagaatatagtttcattgaagttaggttctcatttcagatttcc 55082585  T
Q  84 acttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatcctattgtgctatatgttatcactaattaatt 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55082586 acttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcaactagtcaatcctattgtgctatatgttatcactaattaatt 55082685  T
Q  184 aattattgaccgttcaagcgagaagttgtatgtaagaccacccatggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaag 283  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55082686 aattattggccgttcaagcgagaagttgtatgtaagaccacccatggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaag 55082785  T
Q  284 gctcattcaaaaatgatactggaatcaggaacctcttcattttctctccaacataaacagcaatatacttgtttgatagatgattgacttgcactaaatg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55082786 gctcattcaaaaatgatactggaatcaggaacctcttcattttctctccaacataaacagcaatatacttgtttgatagatgattgacttgcactaaatg 55082885  T
Q  384 atgatcttctaat 396  Q
    |||||||||||||    
T  55082886 atgatcttctaat 55082898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 214 - 338
Target Start/End: Complemental strand, 50913626 - 50913501
Alignment:
Q  214 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcagg 312  Q
    ||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |    
T  50913626 tgtaagaccacccattggatgacagtagccaaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaatcaag 50913527  T
Q  313 aacctcttcattttctctccaacata 338  Q
    ||||||||||||||||||||||||||    
T  50913526 aacctcttcattttctctccaacata 50913501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 214 - 338
Target Start/End: Complemental strand, 38038677 - 38038552
Alignment:
Q  214 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcagg 312  Q
    ||||||||| ||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |    
T  38038677 tgtaagacctcccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaatcatg 38038578  T
Q  313 aacctcttcattttctctccaacata 338  Q
    |||||  |||||||||||||||||||    
T  38038577 aaccttctcattttctctccaacata 38038552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 214 - 396
Target Start/End: Complemental strand, 38032412 - 38032212
Alignment:
Q  214 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcagg 312  Q
    ||||||||| ||||| |||||||| ||||| || |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||      
T  38032412 tgtaagaccgcccattggatgacaataaccgaattcctcttcagattggctaagcaattcttgaaataaaggctcattcaagaatgatactggaatcata 38032313  T
Q  313 aacctcttcattttctctccaacataaacagcaatat-----------------acttgtttgatagatgattgacttgcactaaatgatgatcttctaa 395  Q
    |||||  ||||||||||||||||||| || |||| ||                 |||||||||||||||||||||||||||||||||||||||| |||||    
T  38032312 aaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatgattgacttgcactaaatgatgatcgtctaa 38032213  T
Q  396 t 396  Q
    |    
T  38032212 t 38032212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 214 - 338
Target Start/End: Complemental strand, 38027585 - 38027460
Alignment:
Q  214 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcagg 312  Q
    ||||||||||||||| |||||||| ||||| || |||||||| | |||||||||||||||||||||||||||||||||||| |||||||| |||||||      
T  38027585 tgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagcaattcttgaaataaaggctcattcaagaatgatacgggaatcata 38027486  T
Q  313 aacctcttcattttctctccaacata 338  Q
    |||||  |||||||||||||||||||    
T  38027485 aaccttctcattttctctccaacata 38027460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 218 - 338
Target Start/End: Complemental strand, 38035181 - 38035060
Alignment:
Q  218 agaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcaggaacc 316  Q
    ||||||||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  38035181 agaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaatcatgaacc 38035082  T
Q  317 tcttcattttctctccaacata 338  Q
    |   ||||||||||||||||||    
T  38035081 ttcgcattttctctccaacata 38035060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 214 - 338
Target Start/End: Complemental strand, 38042070 - 38041945
Alignment:
Q  214 tgtaagaccacccatg-gatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcagg 312  Q
    |||||||||||||||  ||||||||||||| || |||||||| |||||||| | |||||||||||| |||||||||||||| |||| ||||||||||| |    
T  38042070 tgtaagaccacccatttgatgacagtaaccgaattcctcttcagcttggctcaacaattcttgaaacaaaggctcattcaagaatgctactggaatcaag 38041971  T
Q  313 aacctcttcattttctctccaacata 338  Q
    ||||||||||||| ||||||||||||    
T  38041970 aacctcttcatttcctctccaacata 38041945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 38035382 - 38035286
Alignment:
Q  70 catttcagatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatcctattgtgctatat 166  Q
    ||||| ||||||||||||||||||||| |||||||| |||||| ||||| ||||||||| ||  ||||||||  | |||||||||||||| ||||||    
T  38035382 catttaagatttccacttaagaggaaacatcaaaattgacaaaaaaattgctgatgtacaaaaattgtctcaattggtcaatcctattgtcctatat 38035286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 50913797 - 50913649
Alignment:
Q  70 catttcagatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatcctattgtgctatatgtt 169  Q
    ||||| ||||||||||||||||||||  |||||||| |||||||||||| | ||||||| ||  |||||||| ||||||| ||||| | | |  ||||||    
T  50913797 catttaagatttccacttaagaggaagcatcaaaattgacaaagaaatttccgatgtacaaaacttgtctcaactagtcagtcctactatcc--tatgtt 50913700  T
Q  170 atcactaattaattaattattgaccgttcaagcgagaagttgtatgtaaga 220  Q
    |||||| ||  || |||||| | | ||||||| |||||| |||||||||||    
T  50913699 atcactcatacatgaattatagtctgttcaagtgagaagctgtatgtaaga 50913649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 50906835 - 50906941
Alignment:
Q  214 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcagg 312  Q
    ||||||||||||||| |||||||||||||  || |||||||| ||||| |  | ||||||||||||| ||||||||||||| ||||| ||||||||||      
T  50906835 tgtaagaccacccattggatgacagtaacggaattcctcttcggcttgacgcaacaattcttgaaatgaaggctcattcaagaatgacactggaatcaaa 50906934  T
Q  313 aacctct 319  Q
    |||||||    
T  50906935 aacctct 50906941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 38032596 - 38032518
Alignment:
Q  77 gatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatccta 155  Q
    ||||||||| |||||||||| |||||||| |||||||||||| ||||||||| ||  |||||||| || ||||||||||    
T  38032596 gatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaattgtctcaactggtcaatccta 38032518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 38027431 - 38027385
Alignment:
Q  350 acttgtttgatagatgattgacttgcactaaatgatgatcttctaat 396  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  38027431 acttgtttgctagatgattgacttgcactaagtgatgatcttctaat 38027385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 38035031 - 38034985
Alignment:
Q  350 acttgtttgatagatgattgacttgcactaaatgatgatcttctaat 396  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  38035031 acttgtttgttagatgattgacttgcactaaatgatgatcgtctaat 38034985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 38038523 - 38038477
Alignment:
Q  350 acttgtttgatagatgattgacttgcactaaatgatgatcttctaat 396  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  38038523 acttgtttgctagatgattgacttgcactaaatgatgatcgtctaat 38038477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 38038861 - 38038783
Alignment:
Q  77 gatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatccta 155  Q
    |||||| ||||||||||||| |||||||| ||||||||| || ||||||||| ||  |||||||| || ||||||||||    
T  38038861 gatttcaacttaagaggaaacatcaaaattgacaaagaagttgctgatgtacaaaaattgtctcaactggtcaatccta 38038783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 50913467 - 50913426
Alignment:
Q  355 tttgatagatgattgacttgcactaaatgatgatcttctaat 396  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  50913467 tttgctagatgattgacttgcactaaatgatgatcttctaat 50913426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 38027767 - 38027691
Alignment:
Q  79 tttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatccta 155  Q
    ||||||| |||||||||| |||||||| || ||||||||| ||||||||||||  || ||||| || ||||||||||    
T  38027767 tttccacataagaggaaacatcaaaattgataaagaaattgctgatgtacgaaaattatctcaactggtcaatccta 38027691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 50906990 - 50907027
Alignment:
Q  350 acttgtttgatagatgattgacttgcactaaatgatga 387  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  50906990 acttgtttgctagacgattgacttgcactaaatgatga 50907027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 38035248 - 38035208
Alignment:
Q  180 aattaattattgaccgttcaagcgagaagttgtatgtaaga 220  Q
    |||||||||| ||||||||||| |||||| |||||||||||    
T  38035248 aattaattatagaccgttcaagagagaagctgtatgtaaga 38035208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 214 - 396
Target Start/End: Complemental strand, 21608387 - 21608187
Alignment:
Q  214 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcagg 312  Q
    ||||||||| ||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |    
T  21608387 tgtaagacctcccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaatcatg 21608288  T
Q  313 aacctcttcattttctctccaacataaacagcaatat-----------------acttgtttgatagatgattgacttgcactaaatgatgatcttctaa 395  Q
    |||||  ||||||||||||||||||| || |||| ||                 |||||||||||||||||||||||||||||||||||||||| |||||    
T  21608287 aaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatgattgacttgcactaaatgatgatcgtctaa 21608188  T
Q  396 t 396  Q
    |    
T  21608187 t 21608187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 21608571 - 21608493
Alignment:
Q  77 gatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatccta 155  Q
    |||||| || |||||||||| |||||||| |||||||||||| ||||||||| ||   ||||||| || ||||||||||    
T  21608571 gatttcaacataagaggaaacatcaaaattgacaaagaaattactgatgtacaaaaaatgtctcaactggtcaatccta 21608493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 3072342 - 3072297
Alignment:
Q  351 cttgtttgatagatgattgacttgcactaaatgatgatcttctaat 396  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||    
T  3072342 cttgtttgctagatgattgacttgcactaaatgatgatcgtctaat 3072297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 27421973 - 27422070
Alignment:
Q  241 ccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcaggaacctcttcattttctctccaacata 338  Q
    ||||| || |||||||||||  | || |||||||||||||| || |  |||||  ||||||||||||||| |||||  |||||| | |||||||||||    
T  27421973 ccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgatactggaatcacgaaccgtttcattctatctccaacata 27422070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 346
Target Start/End: Complemental strand, 27446248 - 27446144
Alignment:
Q  242 caaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcaggaacctcttcattttctctccaacataaac 341  Q
    ||||||| ||||||| |||||| | | | ||||||||| |||| | |||||| |||||   ||||||||  || | ||||||||| ||||||||||||||    
T  27446248 caaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttttctccaacataaac 27446149  T
Q  342 agcaa 346  Q
     ||||    
T  27446148 cgcaa 27446144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 27559278 - 27559378
Alignment:
Q  241 ccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcaggaacctcttcattttctctccaacataaa 340  Q
    |||||||| ||||||| |||||| |  || | ||||||| |||  | |||||| ||||| |  |||||||| || ||||||||||| |||||||||||||    
T  27559278 ccaaactcttcttctgattggcttaataactattgaaatgaagattgattcaataatgaaataggaatcagaaatctcttcattttgtctccaacataaa 27559377  T
Q  341 c 341  Q
    |    
T  27559378 c 27559378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University