View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10306_low_4 (Length: 351)
Name: NF10306_low_4
Description: NF10306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10306_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 344
Target Start/End: Original strand, 16728694 - 16729024
Alignment:
| Q |
14 |
aacacggtaattccctatggacttacaaagttcccactacattttaaattcaaaaaaccacacacaaaaagcttcaataacttcaaatctcgttatgcac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
16728694 |
aacacggtaattccctatggacttacaaagttcccactacattttaaattcaaaaaaccacacagaaaaagcttcaataacttcaaatctcgttctgcac |
16728793 |
T |
|
| Q |
114 |
agaccggtgtagcgccaccggagatggacgacgaaacaatctcccgcatcgtaacagaaatctccgacctccgcgaaacccaccacactgaaaatccaca |
213 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16728794 |
agaccggagtagcgccaccggagatggacgacgaaacaatctcccgcattataacagaaatctccgacctacgcgaaacccaccacactgaaaatccaca |
16728893 |
T |
|
| Q |
214 |
accactctccgaacagnnnnnnnnnnnnnnncaaaccctcctcaaccattcccaacctttagacccactctacgacgccgtttcaccttcccacctaatt |
313 |
Q |
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||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16728894 |
accactctccgaaaaatccctctcttctctccaaaccctcctaaaccattcccaacctttagacccactctacgacgccgtttcaccttcccacctaatt |
16728993 |
T |
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| Q |
314 |
cccccaatcgacaccgcaatggattcatctc |
344 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
16728994 |
cccccaatcgacaccgcaatggattcatctc |
16729024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 34690261 - 34690307
Alignment:
| Q |
14 |
aacacggtaattccctatggacttacaaagttcccactacattttaa |
60 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34690261 |
aacacggtaattccctatggacttacaaagttcccactacattttaa |
34690307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 59 - 344
Target Start/End: Complemental strand, 14240478 - 14240193
Alignment:
| Q |
59 |
aaattcaaaaaaccacacacaaaaagcttcaataacttcaaatctcgttatgcacagaccggtgtagcgccaccggagatggacgacgaaacaatctccc |
158 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14240478 |
aaattcaaaaaaccacacagaaaaagcttcaataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacgacgaaacaatctccc |
14240379 |
T |
|
| Q |
159 |
gcatcgtaacagaaatctccgacctccgcgaaacccaccacactgaaaatccacaaccactctccgaacagnnnnnnnnnnnnnnncaaaccctcctcaa |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
14240378 |
gcatcgtaacagaaatctccgacctccgcgaaacccaccacaccgaaaatccacaaccactctccgaacaatccctctcttctctccaaaccctcctcaa |
14240279 |
T |
|
| Q |
259 |
ccattcccaacctttagacccactctacgacgccgtttcaccttcccacctaattcccccaatcgacaccgcaatggattcatctc |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14240278 |
ccattcccaacctttagacccactctacgacgccgtttcaccttcccacctaattcccccaatcgccaccgcaatggattcatctc |
14240193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 27076912 - 27076878
Alignment:
| Q |
14 |
aacacggtaattccctatggacttacaaagttccc |
48 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |
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| T |
27076912 |
aacacggtaattccctatggacttgcaaagttccc |
27076878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 90 - 344
Target Start/End: Original strand, 49946161 - 49946415
Alignment:
| Q |
90 |
ataacttcaaatctcgttatgcacagaccggtgtagcgccaccggagatggacgacgaaacaatctcccgcatcgtaacagaaatctccgacctccgcga |
189 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49946161 |
ataacttcaaatctcgttctgcacagaccggagtagcgccaccggagatggacgacgaaacaatctcccgcatcgtaacagaaatctccgacctccgcga |
49946260 |
T |
|
| Q |
190 |
aacccaccacactgaaaatccacaaccactctccgaacagnnnnnnnnnnnnnnncaaaccctcctcaaccattcccaacctttagacccactctacgac |
289 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49946261 |
aacccaccacaccgaaaatccacaaccactctccgaacaatccctctcttctctccaaaccctcctcaaccattcccaacctttagacccactctacgac |
49946360 |
T |
|
| Q |
290 |
gccgtttcaccttcccacctaattcccccaatcgacaccgcaatggattcatctc |
344 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49946361 |
gccgtttcaccttcccacctaattcccccaatcgacaccacaatggattcatctc |
49946415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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