View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10306_low_5 (Length: 274)

Name: NF10306_low_5
Description: NF10306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10306_low_5
NF10306_low_5
[»] chr3 (6 HSPs)
chr3 (20-258)||(23689114-23689352)
chr3 (20-258)||(24061351-24061589)
chr3 (60-258)||(23692624-23692810)
chr3 (60-258)||(23711064-23711250)
chr3 (60-258)||(23729520-23729706)
chr3 (60-258)||(23747975-23748161)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 23689114 - 23689352
Alignment:
Q  20 tacacaaccctaatacacattctttcttctcttcctccattctcgttatttctccctactaccactgtcgcttttctctatcgtttttgcttcctactgc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  23689114 tacacaaccctaatacacattctttcttctcttcctccattctcgttatttctccctactaccactgtcccttttctctatcgtttttgcttcccactgc 23689213  T
Q  120 aactctcttgtttcaacaacatgctttgttttcactccaaagtttcaagtttacatgattcagaaaagctcatctccaatgnnnnnnngaagtttagtga 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  23689214 aactctcttgtttcaacaacatgctttgttttcactccaaagtttcaagtttacatgattcagaaaagctcatctccaatgaaaaaaagaagtttagtga 23689313  T
Q  220 ttatgatgatgatctatacagattttatcaccttgaaga 258  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  23689314 ttatgatgatgatctatacaaattttatcaccttgaaga 23689352  T

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Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 24061351 - 24061589
Alignment:
Q  20 tacacaaccctaatacacattctttcttctcttcctccattctcgttatttctccctactaccactgtcgcttttctctatcgtttttgcttcctactgc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  24061351 tacacaaccctaatacacattctttcttctcttcctccattctcgttatttctccctactaccactgtcccttttctctatcgtttttgcttcccactgc 24061450  T
Q  120 aactctcttgtttcaacaacatgctttgttttcactccaaagtttcaagtttacatgattcagaaaagctcatctccaatgnnnnnnngaagtttagtga 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  24061451 aactctcttgtttcaacaacatgctttgttttcactccaaagtttcaagtttacatgattcagaaaagctcatctccaatgaaaaaaagaagtttagtga 24061550  T
Q  220 ttatgatgatgatctatacagattttatcaccttgaaga 258  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  24061551 ttatgatgatgatctatacaaattttatcaccttgaaga 24061589  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 258
Target Start/End: Original strand, 23692624 - 23692810
Alignment:
Q  60 tctcgttatttctccctactaccactgtcgcttttctctatcgtttttgcttcctactgcaactctcttgtttcaacaacatgctttgttttcactccaa 159  Q
    ||||||| |||||||| |||| |||| || |||||||||||||||| ||||||           |||||||||||||||||||||||||||| |||| ||    
T  23692624 tctcgttttttctcccaactatcactctcccttttctctatcgtttctgcttca----------ctcttgtttcaacaacatgctttgtttttactcaaa 23692713  T
Q  160 agtttcaagtttaca-tgattcagaaaagctcatctccaatgnnnnnnngaagtttagtgattatgatgatgatctatacagattttatcaccttgaaga 258  Q
    ||||||||||||||| || ||| ||||| |||||||||||||        |||| |||||||||||||||||||||||||  || |||||| ||||||||    
T  23692714 agtttcaagtttacattggttctgaaaaactcatctccaatgaaaaa---aagtatagtgattatgatgatgatctataccaatattatcatcttgaaga 23692810  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 258
Target Start/End: Original strand, 23711064 - 23711250
Alignment:
Q  60 tctcgttatttctccctactaccactgtcgcttttctctatcgtttttgcttcctactgcaactctcttgtttcaacaacatgctttgttttcactccaa 159  Q
    ||||||| |||||||| |||| |||| || |||||||||||||||| ||||||           |||||||||||||||||||||||||||| |||| ||    
T  23711064 tctcgttttttctcccaactatcactctcccttttctctatcgtttctgcttca----------ctcttgtttcaacaacatgctttgtttttactcaaa 23711153  T
Q  160 agtttcaagtttaca-tgattcagaaaagctcatctccaatgnnnnnnngaagtttagtgattatgatgatgatctatacagattttatcaccttgaaga 258  Q
    ||||||||||||||| || ||| ||||| |||||||||||||        |||| |||||||||||||||||||||||||  || |||||| ||||||||    
T  23711154 agtttcaagtttacattggttctgaaaaactcatctccaatgaaaaa---aagtatagtgattatgatgatgatctataccaatattatcatcttgaaga 23711250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 258
Target Start/End: Original strand, 23729520 - 23729706
Alignment:
Q  60 tctcgttatttctccctactaccactgtcgcttttctctatcgtttttgcttcctactgcaactctcttgtttcaacaacatgctttgttttcactccaa 159  Q
    ||||||| |||||||| |||| |||| || |||||||||||||||| ||||||           |||||||||||||||||||||||||||| |||| ||    
T  23729520 tctcgttttttctcccaactatcactctcccttttctctatcgtttctgcttca----------ctcttgtttcaacaacatgctttgtttttactcaaa 23729609  T
Q  160 agtttcaagtttaca-tgattcagaaaagctcatctccaatgnnnnnnngaagtttagtgattatgatgatgatctatacagattttatcaccttgaaga 258  Q
    ||||||||||||||| || ||| ||||| |||||||||||||        |||| |||||||||||||||||||||||||  || |||||| ||||||||    
T  23729610 agtttcaagtttacattggttctgaaaaactcatctccaatgaaaaa---aagtatagtgattatgatgatgatctataccaatattatcatcttgaaga 23729706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 258
Target Start/End: Original strand, 23747975 - 23748161
Alignment:
Q  60 tctcgttatttctccctactaccactgtcgcttttctctatcgtttttgcttcctactgcaactctcttgtttcaacaacatgctttgttttcactccaa 159  Q
    ||||||| |||||||| |||| |||| || |||||||||||||||| ||||||           |||||||||||||||||||||||||||| |||| ||    
T  23747975 tctcgttttttctcccaactatcactctcccttttctctatcgtttctgcttca----------ctcttgtttcaacaacatgctttgtttttactcaaa 23748064  T
Q  160 agtttcaagtttaca-tgattcagaaaagctcatctccaatgnnnnnnngaagtttagtgattatgatgatgatctatacagattttatcaccttgaaga 258  Q
    ||||||||||||||| || ||| ||||| |||||||||||||        |||| |||||||||||||||||||||||||  || |||||| ||||||||    
T  23748065 agtttcaagtttacattggttctgaaaaactcatctccaatgaaaaa---aagtatagtgattatgatgatgatctataccaatattatcatcttgaaga 23748161  T

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