View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10306_low_6 (Length: 264)
Name: NF10306_low_6
Description: NF10306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10306_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 6365529 - 6365301
Alignment:
| Q |
19 |
agtgtaatacatttaagcattaaagatgagttcattggtgaaaggtctctttgataagcaccaaaaggtgaagggaactgtggtgttgatgcaaaagaat |
118 |
Q |
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| T |
6365529 |
agtgtaatacatttaagcattaaagatgagttcattggtgaaaggtctctttgataagcaccaaaaggtgaagggaactgtggtgttgatgcaaaagaat |
6365430 |
T |
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| Q |
119 |
gtcttagacatcaacgaactgactgcagctcaaagcgccggtggtgcatttggcggtatcttcgattttgctggtgatgttgccggtactgtacttgaca |
218 |
Q |
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| T |
6365429 |
gtcttagacatcaacgaactcactgcagctcaaagcgccggtggtgtagttgacagtttcttcgattttgttggtgatgctgccggtactgtagctgaca |
6365330 |
T |
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| Q |
219 |
ctgccaccgccttgttccgccgttctgtg |
247 |
Q |
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| T |
6365329 |
ctgccacctccttgttccgccgttctgtg |
6365301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 6356053 - 6355996
Alignment:
| Q |
61 |
aggtctctttgataagcaccaaaaggtgaagggaactgtggtgttgatgcaaaagaat |
118 |
Q |
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| T |
6356053 |
aggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaat |
6355996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 7463153 - 7463096
Alignment:
| Q |
62 |
ggtctctttgataagcaccaaaaggtgaagggaactgtggtgttgatgcaaaagaatg |
119 |
Q |
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| T |
7463153 |
ggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaatg |
7463096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 6340124 - 6340050
Alignment:
| Q |
79 |
ccaaaaggtgaagggaactgtggtgttgatgcaaaagaatgtcttagacatcaacgaactgactgcagctcaaag |
153 |
Q |
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| T |
6340124 |
ccaaaaggtgaaggggacagtgatattgatgcataagaatgtattggatatcaacgaaatcactgcagctcaaag |
6340050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 6426672 - 6426635
Alignment:
| Q |
89 |
aagggaactgtggtgttgatgcaaaagaatgtcttaga |
126 |
Q |
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| T |
6426672 |
aagggaactgtggtgttgatgcaaaagaatgtgttaga |
6426635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 6393108 - 6393072
Alignment:
| Q |
19 |
agtgtaatacatttaagcattaaagatgagttcattg |
55 |
Q |
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| T |
6393108 |
agtgtaatacatttaagcatcaaagatgacttcattg |
6393072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 6412248 - 6412212
Alignment:
| Q |
19 |
agtgtaatacatttaagcattaaagatgagttcattg |
55 |
Q |
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| T |
6412248 |
agtgtaatacatttaagcatcaaagatgacttcattg |
6412212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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