View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10307_high_1 (Length: 851)
Name: NF10307_high_1
Description: NF10307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10307_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 123 - 835
Target Start/End: Complemental strand, 32605852 - 32605147
Alignment:
| Q |
123 |
aaggaattgacttagggtagttgttattagttattagaggtaaaagcctctagagaaatgataacgttttactcattcgtatctttaaaaatggtgtcca |
222 |
Q |
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| T |
32605852 |
aaggaattgacttagggta-ttgttattagttattag--------gcccctagagaaatgataacgttttactcattcgtatctttaaaaatggtgtcca |
32605762 |
T |
|
| Q |
223 |
catgtacaacacccactcttacttaacagcacaaaggaaccaaattgcttgcgtcatgacaaagcactaaacgtaaattccatttgatggtcaacgaaat |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32605761 |
catgtacaacacccactcttacttaacagcacaaaggaacaaaattgcttgcgtcatgacaaagcactaaacgtaaattccatttgatggtcaacgaaat |
32605662 |
T |
|
| Q |
323 |
caaaacatcccctacttcccataaattaagcaaacacaaaataaagtgaaattacaata---gtacaataaattttatttttatatagagatgcatataa |
419 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32605661 |
caaa-catctcctacttcccataaattaagcaaacacaaaataaagtgaaattacaataagagtacaataaattttatttttatatagagatgcatataa |
32605563 |
T |
|
| Q |
420 |
tatcttcctcactttaacattgattctataatatcaaccgatttgaagtggaccaagatcgacggtcggagttgtagtgaaacgatgaaggatggtggca |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32605562 |
tatcttcctcactttaacattgattctataatatcaaccgatttgaagtggaccaagatcgacggtcggagttgtagtgacacgatgaaggatggtggca |
32605463 |
T |
|
| Q |
520 |
tccccttgatagggatggtgtacatgcaaacacttagataatcagttgttttttgtgattagaaaattgtgtacctttatccacactatacaatgaaaat |
619 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32605462 |
tccccttgataagaatggtgtacatgcaaacacttagataatcagttgttttttgtgattagaaaattgtgtacctttatccacactacacaatgaaaat |
32605363 |
T |
|
| Q |
620 |
ggattagtcattgagttgtattcggtataatttgcagattaacatttcatttccatcatgtgatgccagtgagatcaccaaatttactatggtgtgccgt |
719 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32605362 |
ggattagtcattgagttgtattcggtataatttgcaaattaacatttcatttccatcatgtgatgccagtgagatcatcaaatttactatggtgtgccgt |
32605263 |
T |
|
| Q |
720 |
cagtgcaacttcataacgtgttcctttgtgatctaatccgtagttgattgggtttaaatccattccataacacaaacaaagaccgggtaagacggaaggg |
819 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |
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| T |
32605262 |
cagtgcaacttcatattgtgttcctttgtgatctaatctgtagttgattgggtttaaatccattccaaaacacaaacaaagattgggtaaagcggaaggg |
32605163 |
T |
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| Q |
820 |
gttagactttcaaaac |
835 |
Q |
| |
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|||||||||||||||| |
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| T |
32605162 |
gttagactttcaaaac |
32605147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 8076483 - 8076575
Alignment:
| Q |
16 |
gcacactttctctttcatctattcttctttcttcctagtacatgggatgtataaaaatatct-aaaataaaaggtgtctatgtaaaattttcc |
107 |
Q |
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|||||||||||||||| ||| |||||| |||||||||| |||||| |||| |||| | | | | |||||| ||||||||||||| ||||||| |
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| T |
8076483 |
gcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaaaagtgtatgagaataaatggtgtctatgtaacattttcc |
8076575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 42354603 - 42354548
Alignment:
| Q |
11 |
cataggcacactttctctttcatctattcttctttcttcctagtacatgggatgta |
66 |
Q |
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|||| |||||||||||||||||||| |||||| |||||||||| |||||| |||| |
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| T |
42354603 |
cataagcacactttctctttcatcttctcttctctcttcctagtgcatggggtgta |
42354548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 31953039 - 31952948
Alignment:
| Q |
17 |
cacactttctctttcatctattcttctttcttcctagtacatgggatgtataaaaatatct-aaaataaaaggtgtctatgtaaaattttcc |
107 |
Q |
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||||||||||||||||||| |||||| |||||||||| |||||| |||| || || | | | |||||| ||||||||||||| ||||||| |
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| T |
31953039 |
cacactttctctttcatcttctcttctctcttcctagtgcatggggtgtagaaggatgtatgagaataaatggtgtctatgtaacattttcc |
31952948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 38296293 - 38296347
Alignment:
| Q |
16 |
gcacactttctctttcatctattcttctttcttcctagtacatgggatgtataaa |
70 |
Q |
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|||||||||||| ||||||| |||||||||||| || |||||||| |||||||| |
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| T |
38296293 |
gcacactttctcattcatctcctcttctttcttcttactacatggggtgtataaa |
38296347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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