View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10307_high_4 (Length: 420)
Name: NF10307_high_4
Description: NF10307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10307_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 6668348 - 6668736
Alignment:
| Q |
18 |
ctttgcatgttgtttgtgatatgtgaattgctgaatacttgaattaaaaaatttcttttgttgattgtttgctatatacttttaagagattttcagtagt |
117 |
Q |
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| T |
6668348 |
ctttgcatgttgtttgtgatatgtgaattgctgaatacttgaattaaaaaatttcttccgttgattgtttgcaatatacttttcagagattttcagtagt |
6668447 |
T |
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| Q |
118 |
ttaacccttaattttaatttcaacttttaggctattaatcgatgaagaacaaagcttgaatgttctgaaggtggtgtcatgcgataactaacaggtgtag |
217 |
Q |
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| T |
6668448 |
ttaacccttaattttaatttcaacttttaggctattaaataatgaagaacaa-gcttgaatgctctgaaggtggtgtcatgcgataactaacaggtgtag |
6668546 |
T |
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| Q |
218 |
ataatgtatgtatctctctgcatcagtttgttgttattttctccataattatcctcttccatgatttacatatttttgttacagctattgttataattct |
317 |
Q |
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| T |
6668547 |
ataatgtatatatctctctgcatcagtttgttgttattttctccataattatcctcttccatgatttacatattttcgttacagctattgttataattct |
6668646 |
T |
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| Q |
318 |
ttttccccttcattggtttctcttctgcagtgaaaatcaatttagttagcaatgcataatgttgttggtgatctcatctgcgttctgatg |
407 |
Q |
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| T |
6668647 |
ttttccccttcattggtttctcttctgcagtgaaaatcaatttagttagcaatgcataatgttgttggtgatctcatctgcgttcagatg |
6668736 |
T |
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