View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10307_high_8 (Length: 277)
Name: NF10307_high_8
Description: NF10307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10307_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 53 - 263
Target Start/End: Original strand, 42287479 - 42287689
Alignment:
| Q |
53 |
catcattcgattgcaaggaaaatggtcataagtcataacaatctgaagttttgcaagaaagcaagtaaaatccaaccaaaccatagatcaaattcataga |
152 |
Q |
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| T |
42287479 |
catcattcaattgcaaggaaaatggtcataagtcataacaatctgaagttttgcaagaaagcaagtaaaatccaaccaaaccgtagatcaaactcataga |
42287578 |
T |
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| Q |
153 |
ctccttatatatcgctctctttctttcctcttcgtattgagctctaatttatataaattgaagtactctttaaacttctttactaaggaaccttttacat |
252 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42287579 |
ctccttatatatcgttctctttctttcctcttcgtattgagctctaatttatctaaattgaagtactctttaaacttctttactaaggaaccttttacat |
42287678 |
T |
|
| Q |
253 |
ataaaaaggtg |
263 |
Q |
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||||||||||| |
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| T |
42287679 |
ataaaaaggtg |
42287689 |
T |
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