View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10307_high_9 (Length: 250)

Name: NF10307_high_9
Description: NF10307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10307_high_9
NF10307_high_9
[»] chr1 (8 HSPs)
chr1 (1-242)||(42287119-42287360)
chr1 (112-242)||(12804505-12804635)
chr1 (115-242)||(50788816-50788943)
chr1 (110-242)||(12774939-12775071)
chr1 (118-242)||(28496106-28496230)
chr1 (130-242)||(31644070-31644182)
chr1 (118-242)||(36989342-36989466)
chr1 (117-242)||(4160379-4160504)
[»] chr8 (2 HSPs)
chr8 (116-242)||(5788721-5788847)
chr8 (136-242)||(33186737-33186843)
[»] chr2 (3 HSPs)
chr2 (133-242)||(38895872-38895981)
chr2 (118-242)||(40040791-40040915)
chr2 (118-242)||(42898300-42898424)
[»] chr7 (2 HSPs)
chr7 (117-242)||(40749392-40749517)
chr7 (118-242)||(44150800-44150924)
[»] chr4 (2 HSPs)
chr4 (133-242)||(22085521-22085630)
chr4 (136-239)||(30518166-30518269)
[»] chr5 (1 HSPs)
chr5 (178-242)||(1983178-1983242)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 42287360 - 42287119
Alignment:
Q  1 cctaacatttggcaaaagtgtagcatatattatgtatatagagtgatgaattcatatttatgaaatataattagactaacatcgatgtgaagatataaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42287360 cctaacatttggcaaaagtgtagcatatattatgtatatagagtgatgaattcatatttatgaaatataattagactaacatcgatgtgaagatataaat 42287261  T
Q  101 ataaagatgatgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42287260 ataaagatgatgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaac 42287161  T
Q  201 agcatatttctttgagcatttttcacatttccacttcttctc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42287160 agcatatttctttgagcatttttcacatttccacttcttctc 42287119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 112 - 242
Target Start/End: Original strand, 12804505 - 12804635
Alignment:
Q  112 gtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttct 211  Q
    ||||| ||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12804505 gtttggtaccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttct 12804604  T
Q  212 ttgagcatttttcacatttccacttcttctc 242  Q
    | || || ||||||||||||||||| |||||    
T  12804605 tagaacacttttcacatttccactttttctc 12804635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 50788816 - 50788943
Alignment:
Q  115 tgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttg 214  Q
    |||||||| |||||||| |||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||| |    
T  50788816 tgttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttag 50788915  T
Q  215 agcatttttcacatttccacttcttctc 242  Q
    |||| || ||||| ||||| ||||||||    
T  50788916 agcacttatcacacttccatttcttctc 50788943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 110 - 242
Target Start/End: Complemental strand, 12775071 - 12774939
Alignment:
Q  110 atgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatattt 209  Q
    |||||| |||||| |||||||| |||||||| ||||||||||| ||  ||||||||||||| |||||||| |||||||||||||||||||||||||| ||    
T  12775071 atgtttattacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatactt 12774972  T
Q  210 ctttgagcatttttcacatttccacttcttctc 242  Q
    ||| || || |||||||| ||||| || |||||    
T  12774971 cttagaacacttttcacacttccattttttctc 12774939  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 28496106 - 28496230
Alignment:
Q  118 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc 217  Q
    ||||| ||||||||||||||||| |||||| | |||||||| |||||||| || || | ||| ||||||||||||||||| || |||||||| || || |    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  218 atttttcacatttccacttcttctc 242  Q
    |||||||||||||||||||||||||    
T  28496206 atttttcacatttccacttcttctc 28496230  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 31644070 - 31644182
Alignment:
Q  130 agggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatt 229  Q
    ||||| |||||||||||| ||||||||| ||||||||| || ||||| || |||||||||||||| |||||||||||  |||||||||| || |||||||    
T  31644070 agggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagcacttatcacatt 31644169  T
Q  230 tccacttcttctc 242  Q
    |||| || |||||    
T  31644170 tccattttttctc 31644182  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 36989466 - 36989342
Alignment:
Q  118 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc 217  Q
    ||||| || |||| ||| ||||| |||||| | ||||| || ||||||||  | || ||||| |||||||||||||||||||||||||||||||| || |    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  218 atttttcacatttccacttcttctc 242  Q
    | || |||||||||||||| |||||    
T  36989366 acttatcacatttccactttttctc 36989342  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 4160504 - 4160379
Alignment:
Q  117 ttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgag 216  Q
    |||||| ||||||||||| ||||| |||||  |||| ||| |||| |||||| | || ||||| ||||||||||| || ||||| ||||||   || ||     
T  4160504 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 4160405  T
Q  217 catttttcacatttccacttcttctc 242  Q
    ||||| ||||| ||||||||||||||    
T  4160404 catttctcacacttccacttcttctc 4160379  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 5788721 - 5788847
Alignment:
Q  116 gttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttga 215  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||    
T  5788721 gttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttga 5788820  T
Q  216 gcatttttcacatttccacttcttctc 242  Q
     || |||||||||||||||||||||||    
T  5788821 acacttttcacatttccacttcttctc 5788847  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 33186843 - 33186737
Alignment:
Q  136 ccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttccact 235  Q
    |||||||||||| |||| ||||||| |||||||   ||||| || |||||||||||||||||||||||||||||||| || ||||| |||||||||||||    
T  33186843 ccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccact 33186744  T
Q  236 tcttctc 242  Q
    | |||||    
T  33186743 ttttctc 33186737  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 38895872 - 38895981
Alignment:
Q  133 gtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttcc 232  Q
    ||||||||||||||| | ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||    |||||||| || ||||| ||||    
T  38895872 gtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacacttcc 38895971  T
Q  233 acttcttctc 242  Q
    ||||||||||    
T  38895972 acttcttctc 38895981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 40040915 - 40040791
Alignment:
Q  118 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc 217  Q
    ||||| ||||| || ||||||||||||||||| || ||| |||| |||||| |||||  ||| || ||||||||||||||||| ||||||||||| || |    
T  40040915 tacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttagaac 40040816  T
Q  218 atttttcacatttccacttcttctc 242  Q
    | || ||||| ||||||||||||||    
T  40040815 acttatcacacttccacttcttctc 40040791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 42898424 - 42898300
Alignment:
Q  118 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc 217  Q
    ||||| ||||||||||| ||||| |||||||| |||||||| || ||||| || || || || |||||||| || |||||||| ||||| ||||| ||||    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc 42898325  T
Q  218 atttttcacatttccacttcttctc 242  Q
    | || ||||||||||||||||||||    
T  42898324 acttgtcacatttccacttcttctc 42898300  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 40749517 - 40749392
Alignment:
Q  117 ttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgag 216  Q
    |||||| |||||||| || |||||||||||  |||||||||||||||||||||| ||||  || ||||||||||||||||| || ||||||||||| ||     
T  40749517 ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaa 40749418  T
Q  217 catttttcacatttccacttcttctc 242  Q
    || || ||||| ||||| ||||||||    
T  40749417 cacttatcacacttccatttcttctc 40749392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 44150800 - 44150924
Alignment:
Q  118 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc 217  Q
    |||||||| || | ||| |||||||||||| | ||||| |||||||||||||| ||    || || |||||||| ||||||||||||||| | || ||||    
T  44150800 tacctagaaaatatggttccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagc 44150899  T
Q  218 atttttcacatttccacttcttctc 242  Q
    | || ||||||||||| ||||||||    
T  44150900 acttgtcacatttccatttcttctc 44150924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 22085521 - 22085630
Alignment:
Q  133 gtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttcc 232  Q
    ||||||||||||||| | || |||||||| |||||| ||||   ||| |||||||||||||||||||| ||||||||||| || || |||||||| ||||    
T  22085521 gtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttcc 22085620  T
Q  233 acttcttctc 242  Q
    ||||||||||    
T  22085621 acttcttctc 22085630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 30518166 - 30518269
Alignment:
Q  136 ccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttccact 235  Q
    ||||| |||||| | ||||||||||||||||| || || || || ||||||||||| || |||||||||||    |||||||| || ||||| |||||||    
T  30518166 ccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccact 30518265  T
Q  236 tctt 239  Q
    ||||    
T  30518266 tctt 30518269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 1983242 - 1983178
Alignment:
Q  178 tgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttccacttcttctc 242  Q
    |||||||||||||| ||||||||| ||||    |||||||| || ||||| ||||||||||||||    
T  1983242 tgtgctttccaatccgattgaacaacataaaattttgagcacttctcacacttccacttcttctc 1983178  T

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