View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10307_low_12 (Length: 248)
Name: NF10307_low_12
Description: NF10307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10307_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 8411241 - 8411029
Alignment:
| Q |
27 |
aaacaatccaaacatgttcctaaaaggtatg--gtgaaagattgtagtaaagtcgtgacatatgatgaccctattattcttaatataacaaggtctaaaa |
124 |
Q |
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| T |
8411241 |
aaacaatccaaacatgtccctaaaaggtatgtggtgaaagattgaagtaaagtcgtgacatatgatgaccctattattcttaatataacaaggtctaaaa |
8411142 |
T |
|
| Q |
125 |
aggttgaaactagtgtactggcaggatatgttattaaccttgagaaagagttgtctactagcatttctgttggagcagctcttgtgcaatcaacacagtt |
224 |
Q |
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|||| |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8411141 |
aggtagaaactagtgtactggtaggagatgttattaaccttgagaaagagttatctactagcatttatgttggagcagctcttgtgcaatcaacacagtt |
8411042 |
T |
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| Q |
225 |
tgaagatgttcat |
237 |
Q |
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||||||||||||| |
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| T |
8411041 |
tgaagatgttcat |
8411029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 20424693 - 20424906
Alignment:
| Q |
25 |
caaaacaatccaaacatgttcctaaaaggtatg--gtgaaagattgtagtaaagtcgtgacatatgatgaccctattattcttaatataacaaggtctaa |
122 |
Q |
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||||||||| |||||||| ||||||| ||||| |||||||| ||| |||||| ||| || |||| || ||||||||| | |||||| |||||| || |
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| T |
20424693 |
caaaacaattcaaacatgaccctaaaaagtatgtagtgaaagaatgtcgtaaaggtgtggcagatgaagatcctattattagtgatataataaggtccaa |
20424792 |
T |
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| Q |
123 |
aaaggttgaaactagtgtactggcaggatatgttattaaccttgagaaagagttgtctactagcatttctgttggagcagctcttgtgcaatcaacacag |
222 |
Q |
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|||| |||||||||| |||| | || || |||||||| ||||| ||||||||||| ||||||| ||||||||| |||||| | |||||||||||||| |
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| T |
20424793 |
ggaggtagaaactagtgcactgataagaaatattattaactttgaggaagagttgtctgctagcatctctgttggaacagctcgtttgcaatcaacacag |
20424892 |
T |
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| Q |
223 |
tttgaagatgttca |
236 |
Q |
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||||||||||||| |
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| T |
20424893 |
attgaagatgttca |
20424906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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